Clavelina lepadiformis (light-bulb sea squirt): 143472999
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Entry
143472999 CDS
T11416
Name
(RefSeq) small subunit processome component 20 homolog isoform X1
KO
K14772
U3 small nucleolar RNA-associated protein 20
Organism
clep Clavelina lepadiformis (light-bulb sea squirt)
Brite
KEGG Orthology (KO) [BR:
clep00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
clep03009
]
143472999
Ribosome biogenesis [BR:
clep03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
143472999
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UTP20_N
UTP20
UTP20_C
NYD-SP28
NopRA1
7TMR-HDED
Ubiquitin_DCDC1
Motif
Other DBs
NCBI-GeneID:
143472999
NCBI-ProteinID:
XP_076826154
LinkDB
All DBs
Position
1:14244547..14253639
Genome browser
AA seq
2690 aa
AA seq
DB search
MPASAAPKHKEKNQFRFKTFSERIALVNVDGIHRIRRREDVDEEEDFSEFLEAMKKWRDL
DLSAHFVAFRKEVSSKCKTYKMIIHYKDDLIQALQHHLQVSDSLAYHGLLELLVALCKDL
SSDFYPHFPKFFIILTQILKCNDPERLEQVFLTLSLLFGQLWRLMICDIENVLSMYKILL
SGDHPAHIQNFAGESISFLLRKTSDIKSVLGNLFLMVCEKSASSSAVGYILFYMLRSSQN
HFHSSTDRVLPVILSFLKGGHKDKNFPCSTFSAINFSIKLMAEHTRRQYAVPVWKVLINE
ISTSDNDDVNLMYVNFLLKLLNTWCSSYQCSRLVCEEEFVNALRTCFKLCEHYQSSDQGG
DVFSSASMLLSTVLHGSKSELKQLTKSEVIRIFIELDSNYEVTIQFFESIFGLPDFEDIA
LRPFLIFCQKLIQLEEWTHMILKLIVKYSLKNEAIPLTYKQLQSYSPSILNFAAVAKKVI
ETRPCNVIKNLIENCRSPPTLWYALVAAQHIRPFPQTASRSVLDLIRNVLSENMVSPENL
AVASIACQTLVILHPYETLQDLLSIDWVSLLNTWKTNFHFLMILELILNKAKNFAQVIDC
ETVKCSLEENVSSHSSHLRLLSLKILQQIDTNNELIYEACILCEGTTASIQDARQKILHI
SKLQKHAGAPEMADFVKRIMIRFLFANFYINFSSLWPPVQEVICSHAVANKKDEFWVVVT
QLLKNSMDIAIKSQWWKKNNTIEGNNTLKSSEIDVFDTFVSGICFAKENVNTRPSFYNFR
LQLWKTLSLLPQPGVIESFNRILVGLLFQFLENEYYIVDQWLAPSQDLNSCSIGEDGFSV
SRHCKKNVTCTLTTIFLVFARFHNLDSAVQSKKLKNIFYEFLSHLNAEVQQAALKCIMTY
KLKGVMKFKEKLFDFFDDKKFRDNLTHFIPSELDDDDRQMIMPVLLRLLFGRMKSKTGAS
TGGKSLSATRCSIIVRYLGSVNEKEMRLFLELVLDPYNNFANKSILECVSIAEENAKNSK
IIVPLARQQGILGTIDVLIDKQKQNLPIDSYSVMMKVLLSFVVSHTTLISQHTSDSSVGE
KKTILSYLKLVKKMSRDCLLNLLNVWPDPKGLSKSEIAVLFDRLVWPELPKLIHESSGNP
GFLLKLFDCFAKKPKFMLYLVKINLKEVSDASEKHAQCALEVLLNLMSSSKCSTEVTTHI
LNIVTHLLFSEEDSQLESSGDLQSIVRHSLNVVGNLAVDINLDKAHTISELGTLIVTPYV
SKILEYFVRKLRQSKKGLLLPSKHLDLLTVLSRNITMESMLLNLSELLIAHINAICLKQG
NPNFKSICTSLKTLSHIIKGPRLLPQISCLFSKLSDRDCRLLLVDVLNKACESSLDLSWT
CSIVTRLNAWNKRFVEEMDFDARLTAFQDIFQKLNSDNCCELFEDNCFKFLPIIHCCMHT
VLTNYSDLSLRESVFRVLDLVISKVKILLEEDFETGSPVYSLMIKNLILSTVQIGIKSAD
EGCRHESIQILAKIVSVFPNEPFLEGLMTLTNATNPDDDFFENVRHIQMHRRARAYRKLA
NALSSYGSSNETKFSQFSDENEEAQVMKNGNAAIPSIVARRYLLPLALQTLNNQDFTKLE
YLRDACIELVRSCASGMQWSAYKRLLLRTIWNLQRYPHAIEIICAILEVFPYDLANINLP
DIRGSVVPPVVSCAIRGSVGHEAKEEDMLTEEEHLSEENVMENGSESALYRSIYVDVTDK
ILPKLNKILSSKNEDDQHKLSSTKADIDQYKKKIPLAIAITSLLRKMPIATMKASITGVI
IKVIGFLRHKLHDIRVVAVETIVTMFQQLGIQYLFVIVKELKSGLAKGFQRHVITHVINN
LLNAAASIGKIGMFDYSLNLLLEVLNEELFGALAAEKVVDKLKAKIPEARGRSKAYNVYK
LIATFISKDYIMTLIEPLKNHLNGTHKHTVKNIAKEVFSEINAGLLSNSSFSATDLLSLV
HGLVTENIPSLFKENFESVPQPKDKSRKPPSCLLLQEAPARYGFKSTVKSIQTNLHVIVE
FALQLLHHSMKRHVVNLSDQLHLEMLDPLVPCFAKCLKSTHQQTVVNSARCITKLLRADL
PSMAANCKNINASLFKILKNHTNDTGNQEVAAVSFKCLSVMCSTDHGKSLSDTQLQILLT
YSEEDLYDSQRQSHAFSLLKSIMKKGLKCDSLLDIMDKVKKIAIQSQVTSSRALASNLYL
YFIVNYPMTLKKLDHHLEFVLAQLTYEYEAGRLAAIELLLAIINDFPLKIISSHSGVLFI
PTAAVLINDESPTCRKAAGEVIKVLIGRLEHEQKNELFTYVMQWYRQDDTVLHQKLGSLL
LSIFTEVDKTGFHKHISDLLPLVHNHILQEMKETDEVDDNLKAKDHALFHHLSAFLSIVK
HCAVLTEGKWQNELSQIFQAVQTLLTHPHDWIRFICAQIMGSLFASCDPAEIIQTKGTYL
TIDLESTMFDLAKCFCNQLRFNQLKEQHAEQIIKNILYICRVLDLKHQHKVGHHDDQEKV
VVHRTILFILRQLLIISKNEQTLNPKDTTKRMTVLKFIAAFSLNIKYPERMLNLLLNPVY
RGINASATHGSNEIQSITDLKSLSSEVLEIIKQKFASDIFARAYLKVSQTISHKQRKRKR
EKAVQLVANPVKAAAAKIRKHERTKQQRKRKIATMRPEYGAALSKRAKSL
NT seq
8073 nt
NT seq
+upstream
nt +downstream
nt
atgccagcttcagctgcacccaaacacaaagaaaaaaatcaatttcgatttaagactttt
tctgaacgcattgcactggtcaatgtcgatggcatacatcgaatccgacgaagagaagat
gttgatgaagaggaagacttttctgaatttttagaagctatgaagaaatggagggattta
gatttgtctgcacactttgttgcatttcgaaaggaagtttcatccaagtgcaaaacatat
aagatgataattcattacaaagatgacttaatacaggcactacaacaccacctgcaggtg
tctgattcccttgcttatcatggcttactcgagctgttggttgccctatgcaaagattta
agttcagatttttatcctcattttcccaagttttttattatactgacgcagatcttaaag
tgtaatgaccctgaaagactggaacaggtctttttaaccttgtcattgctgtttggtcag
ttatggcgattgatgatttgtgatatcgaaaacgtgctcagtatgtacaaaattttgttg
tcaggtgatcatccagctcatatacagaattttgcaggtgaaagcatttcttttttgctt
cgtaaaacttcagatataaaaagtgtactgggaaatctattcttgatggtgtgcgaaaag
tcagcctcttcaagtgctgtgggatacatccttttttatatgttgagatcatctcagaac
cattttcattcaagcactgatagggttttgccagtcatcctgagctttttgaagggtggc
cataaagacaaaaactttccttgcagcacttttagtgccataaatttttccatcaaactt
atggcagaacacacaagaagacaatatgcagtgcctgtatggaaagtgctcataaatgag
attagcacaagtgacaatgacgatgttaacttaatgtatgtaaactttcttttgaagttg
ttaaatacttggtgttctagctaccaatgctctagattggtttgtgaagaagaatttgtc
aacgctttgagaacatgtttcaaattatgtgagcattatcagtccagtgaccaaggcggt
gatgtcttttcttctgcatcaatgcttttatcaacagttttgcatggatcaaaatctgaa
ttaaaacagctcacaaaatccgaagttattaggatattcatagaattagattcaaattac
gaagtcaccattcaattttttgaatctatctttggtttaccagattttgaagacattgct
cttcgtccttttttaattttttgtcaaaagttaatccagctagaagagtggacgcacatg
attttgaagttgatcgtaaagtattccttaaagaacgaagctataccacttacttacaaa
cagctgcaatcctactcacctagtattttaaattttgctgctgttgctaagaaagtcatt
gaaaccagaccatgcaatgtgataaaaaatttgattgaaaattgtcgcagccctcccaca
ctttggtatgctttagttgctgcccagcacataaggccatttcctcaaacagcctcaaga
tcagtattggatttaataagaaatgtactctcagaaaatatggtttctccagaaaatctt
gcagtagcttccatagcatgccaaactcttgtaattttacacccctatgaaactttgcag
gacttactgagtattgactgggtatctctgctgaacacttggaaaacgaatttccatttt
ttaatgatcttggaattaattttgaacaaggcaaaaaactttgcacaagttattgattgc
gaaacagtaaaatgtagtttggaagaaaatgtttcatcccacagttcacatttgcgattg
ctgtccttgaaaattctgcaacaaattgatacaaataatgaattaatttatgaagcatgt
atattatgtgagggaacaacagcttctattcaagatgcaaggcagaaaatcttgcatatc
agtaagctgcaaaagcatgcaggagcacctgaaatggcagattttgtgaaaaggattatg
attcggtttttatttgccaacttttacattaacttttcttccttgtggccacctgtccaa
gaagtaatttgttctcatgctgttgccaataaaaaggatgagttctgggtggtagtgact
cagttattgaaaaatagcatggatattgccattaaaagccagtggtggaaaaaaaacaat
accatagagggtaacaacactttgaaatcgagtgaaattgatgtgtttgatacctttgta
agtggaatatgttttgccaaagaaaatgtaaatacacgaccaagtttttataattttcgt
ttgcagctttggaaaaccctttcattgcttccacaacctggagtgattgaaagttttaat
cggatcttagttggtttgctcttccagtttttggaaaatgagtattacattgttgatcaa
tggctagctcctagtcaagatttaaattcgtgttctattggcgaggatggattttctgtt
tctagacattgcaagaagaatgtaacatgcacattaacaacaatttttttagtctttgca
agatttcataatcttgactccgcagttcaatcaaagaagttgaagaatatcttttatgaa
tttttaagtcatttaaatgctgaagttcaacaagctgcactgaaatgtattatgacttat
aaattaaagggtgtcatgaagtttaaagagaaactttttgacttttttgatgacaaaaag
tttcgtgataatttgacccatttcatcccttctgaactggatgatgatgatcgtcagatg
ataatgcctgtgctgcttagactattatttggtcgcatgaaatctaaaactggagcgtcc
acaggaggtaaatctttgtcagctactagatgttcaattattgtgcgatatcttggcagt
gtcaatgaaaaggaaatgcgtttatttttggaactggtgctagatccttacaacaatttt
gcaaacaagtctatattagagtgtgtctcgattgctgaagagaacgctaaaaactcaaaa
attattgttcctctagcaagacaacaaggcattcttggaactattgatgttcttattgac
aagcaaaaacagaatttgccaatagacagttattctgttatgatgaaagtcctccttagt
tttgttgtgtctcatacaacacttatttctcaacatacatcagattccagtgttggtgaa
aagaaaacaatactttcatatttaaaacttgtgaaaaaaatgtcgcgagattgcttgctt
aacctcttaaatgtctggcctgatcccaaaggattgagtaaatctgagattgcagtttta
tttgatagacttgtttggcctgagctgcctaaactaattcatgaaagttctggaaatcct
ggattcttgttaaagctgtttgattgttttgccaaaaagcccaagtttatgctttattta
gtgaagataaatttgaaagaagtttccgatgcttcagaaaaacatgcccaatgtgccttg
gaagtccttcttaatttgatgagttcttccaaatgcagcactgaggttaccacacacatt
ctaaatatcgtaacacaccttctgtttagtgaagaagatagtcagttagaatcatctgga
gatttgcaaagcattgtacggcattctttgaatgttgtagggaacttggcggtggacatc
aatctggataaagctcacaccatatcggaactaggcacgcttattgttacaccttacgtg
agtaaaattctggaatattttgtcagaaagctgaggcaaagcaagaaagggctcttgctt
ccatctaaacatttggaccttttaactgttctcagcagaaatataacgatggagtcgatg
cttttgaatttgagtgaacttctcattgctcatatcaatgcaatttgtttaaaacaaggg
aatcccaatttcaaatcaatatgtacatcattgaaaaccctttcgcatataatcaaaggt
ccaagactattaccccagatatcttgtctgttttcgaagctgtctgatcgggactgtagg
ttgttgcttgttgatgttttgaataaagcttgtgagtcttccttagatctttcatggaca
tgcagtattgttacaagattaaatgcatggaacaagcgatttgttgaggagatggatttt
gatgcaagattaactgcttttcaagatatttttcaaaagctcaacagtgataattgttgt
gaactatttgaagacaactgttttaagtttttgcccatcatacattgctgtatgcatacg
gttcttaccaattattcagatttatctctgcgtgaaagtgtgtttagagtgttggattta
gtaataagcaaagtaaagattttacttgaggaggattttgaaacaggctcaccagtatat
tccctcatgataaaaaacttaatattatctactgtgcagattgggatcaaatctgcagat
gaaggatgcagacatgaaagcatacaaatcttagctaaaattgtttcagtgtttccaaat
gaaccatttttggaaggtttgatgactttaactaatgctacaaatcccgatgatgatttt
tttgaaaatgttcgacacatccaaatgcatcgaagggcaagagcttatcgaaagctagca
aatgctttatcatcgtatggatccagcaacgaaactaaatttagccagttttctgatgaa
aatgaagaagcccaagttatgaaaaatgggaatgctgcaattccttctattgtcgcccgc
agataccttcttccacttgcacttcagacattaaacaaccaagacttcacaaaattagaa
tatttgcgtgatgcgtgcattgaattggtcaggagttgtgcatccggcatgcagtggtca
gcatacaaacgacttttgttgaggacaatttggaatttacagcgatacccacatgctata
gaaataatttgtgccattttggaagtttttccttatgaccttgctaacattaacttgcca
gatataagggggagtgttgttcctccagtggtgagctgtgctatcaggggaagtgttggt
catgaggctaaagaagaagatatgttgacggaagaagaacacttgagtgaggaaaatgtc
atggagaatggaagtgagtctgcactgtacagaagcatttatgttgatgtcacagacaaa
attttgccaaagctgaacaaaattttgtccagcaaaaatgaggatgatcaacacaaatta
tctagtaccaaagctgatatagatcaatataaaaagaaaatacctttagcaattgcaatc
acttcattgttgagaaaaatgcctattgcaactatgaaagcaagcattaccggtgtcata
attaaggttattggctttttacgacacaagttgcacgacataagggtggttgctgttgaa
acaattgtcaccatgtttcaacagttgggtatacaatatttatttgtaatagtcaaagag
ttaaagagtgggttggcaaaaggtttccaacgccatgtcatcactcacgtcattaacaac
ttgttaaatgcagcagcttcgatcggaaagattggcatgtttgactattccttgaatttg
ttgcttgaagtattgaatgaggagttatttggtgcattggcagcggaaaaagtggtagat
aaattgaaagcaaaaatacctgaagccagaggtcgcagtaaagcttacaatgtatacaaa
ttaattgctacattcataagcaaggattacattatgaccttaattgagcctttgaaaaat
catttgaatggaactcataaacatacagtcaaaaacattgcaaaagaagtattttcagaa
ataaatgctggcctgctttcaaattctagcttttctgctactgatttgctatcattggtt
catggcctggtaacagaaaatattccttctctctttaaagaaaattttgaaagtgtgcca
caaccaaaggataagagtaggaagcctccttcatgtttgttgttgcaagaggcacctgcg
agatatggcttcaaatctactgtgaaatcaatacaaacaaatttacatgtaatagttgaa
tttgccctgcaacttctccaccattctatgaaacgtcatgttgtcaatttgtctgatcaa
cttcatctcgaaatgcttgatcctctagtgccctgttttgccaaatgtttaaaatcgaca
catcagcaaacagtagttaactctgcaagatgtataactaagttactgagggctgatctg
ccaagtatggctgccaactgcaaaaatataaatgcatcattattcaaaatcttgaaaaac
cacacaaatgatactggaaatcaagaggttgcagcagtcagctttaaatgcttgagtgta
atgtgttcaacagatcatgggaagagtttgagtgacacacaacttcaaatattgcttact
tacagtgaagaagatttatatgacagtcaaagacaaagtcatgcattcagtctgttgaag
tccattatgaagaagggtctgaaatgtgattcactgctcgacattatggataaggtcaag
aaaattgcaatccaatcacaagtgacttcgtctagagccttggcaagcaacctgtatctt
tattttatagtcaactatcccatgactctaaaaaaacttgatcatcaccttgaatttgtt
ttggcacaactgacatatgaatatgaagcgggaagattagcggcaattgaacttttgttg
gcaattataaatgattttcctcttaaaattatatcaagtcattctggagttttgttcatt
ccaacagcagcagtcttaatcaatgatgagtcaccaacctgtagaaaagctgctggtgaa
gttatcaaagtgctgatcggaagacttgaacatgagcagaagaatgagctcttcacatat
gttatgcagtggtaccgacaagatgatacggtgcttcatcaaaagcttggttctctgctg
ctgtcaatttttactgaagtggataaaacgggcttccataaacatatatctgatctcctg
cccctggttcataaccacatattgcaagaaatgaaagaaacagatgaagtagatgacaac
ttgaaagcaaaagaccatgcacttttccatcatctctcggcttttttgagtatagtgaaa
cattgcgctgtcttaacagaaggaaaatggcagaatgaattatcccagatattccaagct
gtacagactcttttaactcatccacatgactggattcgtttcatttgcgctcagattatg
ggtagtttgtttgcttcctgcgatcctgcagaaataattcaaacaaaaggcacttatttg
actattgatttggaatcaactatgtttgatctggcaaaatgcttttgcaatcagttgaga
ttcaatcagttgaaagagcagcatgcagaacaaataatcaaaaacattttgtatatttgt
cgagtcttggatttaaaacatcagcacaaagtgggacatcatgatgatcaagagaaggta
gtcgtgcatcgtaccattttatttattcttcgacagcttcttattatctccaaaaatgaa
caaacactcaatcccaaggataccacaaagcgaatgactgtattgaaatttatagcagca
ttctctcttaacataaaatacccagaacgcatgttaaatttgctgctgaatcctgtgtac
agaggaatcaatgctagtgctacacatggtagcaatgagatacaatcaatcacagaccta
aaatccttatcatcagaagttcttgaaatcataaagcaaaagtttgccagcgatattttt
gcaagagcatacctgaaagtttcccagacaatttcgcacaagcaaaggaagcgaaaacgt
gaaaaagctgtgcagcttgttgccaatcctgtaaaagctgctgctgcaaaaattcgcaaa
catgaaagaacaaaacaacagagaaaacgaaaaatagcaactatgagaccggaatatggt
gcagctctttcaaaacgagctaaatcgttgtag
DBGET
integrated database retrieval system
