Caldisphaera lagunensis: Calag_0050
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Entry
Calag_0050 CDS
T02380
Name
(GenBank) transcription initiation factor TFIIIB, Brf1 subunit/transcription initiation factor TFIIB
KO
K03124
transcription initiation factor TFIIB
Organism
clg
Caldisphaera lagunensis
Pathway
clg03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
clg00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
Calag_0050
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
clg03021
]
Calag_0050
Transcription machinery [BR:
clg03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
Calag_0050
Prokaryotic type
Archaeal type
TFB
Calag_0050
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Ortholog
Paralog
GFIT
Motif
Pfam:
TFIIB
Zn_Ribbon_TF
Zn_ribbon_RRN7
A2L_zn_ribbon
Sigma70_r4
HTH_36
Sigma70_r4_2
HTH_24
Cyclin_C
Vps36-NZF-N
RPA_interact_C
Trm112p
Motif
Other DBs
NCBI-ProteinID:
AFZ69842
UniProt:
L0A9M1
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All DBs
Position
complement(44226..45161)
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AA seq
311 aa
AA seq
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MKCPRCSSDNLVTTIDGKLVCQNCGLVVDENLLADRPEWRSYNEKGIQNTKGVERASQPE
TLLRHDKGSGALVFTPPKSRNLLKSFNSRRISMRHATSRSEMPQIAMFSLANKLSEYFNL
PRSASQTLGLILHEYIEKNGGSVGKYKEAIIAAAFAKVVELYNLNISQSEIEEFMEIDSN
KLWEGKKKLNDLGILSKYRFIESENMGYTDSKDRMLTRVVTYINRIVSSLNLNQTIIEQS
ISFVKESLSSGKTLYGKKPEAIAAATVYLISRLNGHDISQKEIAETVSIKESTVRKLYKF
LITNMSIVVYV
NT seq
936 nt
NT seq
+upstream
nt +downstream
nt
ttgaaatgcccaagatgtagttctgataatttagtaacaactattgatggtaaattggtt
tgtcaaaattgtggtttagttgtagatgaaaatttattagctgatagaccagagtggaga
tcatataatgaaaaaggaattcagaacacaaaaggtgtagaaagagcttctcagccagaa
accctgttaagacatgataaaggaagtggtgctttagtatttacaccccctaaatccaga
aatcttttaaaatcgtttaatagtagaagaataagcatgagacatgcaacttctagatca
gaaatgcctcaaatagctatgttctctttagcaaataaacttagcgaatattttaattta
cccaggagcgcttctcaaacacttggattgattcttcacgaatatatagaaaagaatggg
gggtccgttggtaagtataaagaagcgataattgctgctgcatttgctaaagttgttgaa
ctatataatctaaacatatctcaatctgaaatcgaagagttcatggaaatagatagtaat
aaattatgggaaggtaagaagaaactcaacgatttaggcattttatccaaatatagattt
atagaaagcgaaaatatgggttatactgatagcaaagatagaatgttaactagagttgtt
acgtatataaatagaatagtatcttcattaaatttaaaccagacaatcatagaacaatca
ataagctttgtaaaagaatctttgtcatctggtaaaacactttatggtaaaaagccagag
gcaattgctgcagcaacagtatatttaatatcaagattaaatggtcacgatattagtcaa
aaagagatagctgaaactgtttcaataaaggaatcaactgtaaggaagctttacaaattc
ttaatcacaaacatgtcaatagtcgtttatgtttaa
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