Caldisphaera lagunensis: Calag_0420
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Entry
Calag_0420 CDS
T02380
Name
(GenBank) DNA-directed RNA polymerase, subunit E''
KO
K15171
transcription elongation factor SPT4
Organism
clg
Caldisphaera lagunensis
Brite
KEGG Orthology (KO) [BR:
clg00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
Calag_0420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
clg03021
]
Calag_0420
03019 Messenger RNA biogenesis [BR:
clg03019
]
Calag_0420
Transcription machinery [BR:
clg03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
Calag_0420
RNA polymerase I system
Calag_0420
Messenger RNA biogenesis [BR:
clg03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
Calag_0420
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spt4
DZR
Zn_ribbon_3
Zn_Ribbon_1
zf-ChsH2
Zn_ribbon_15
Zn_Ribbon_TF
Zn_ribbon_RRN7
UPF0547
DZR_2
HypA
Znf_XAF1_N
DUF7567
Zn_ribbon_LapB
RUBY_RBDX
zf-C4H2
TackOD1
NRDD
Zn_ribbon_8
RecR_ZnF
DUF7577
DUF7563
Zn_ribbon_RanBP
Motif
Other DBs
NCBI-ProteinID:
AFZ70189
UniProt:
L0A9U4
LinkDB
All DBs
Position
427984..428217
Genome browser
AA seq
77 aa
AA seq
DB search
MPRKMPTKKIAMKACKNCGALVPKEANICPVCGSNNFTEDWEGIFVVISTDSEIAKELKF
NKKGTYAIKVSGSYIIK
NT seq
234 nt
NT seq
+upstream
nt +downstream
nt
ttgccaagaaaaatgcctacgaagaaaattgcaatgaaggcatgtaagaattgtggagct
ttagttccaaaggaggcaaatatatgtccagtttgtggcagcaataactttactgaagat
tgggaaggtatttttgttgtaataagcacggattcagaaatagcaaaagaattaaagttt
aacaagaaaggtacatatgctattaaagtatcaggttcttacattataaagtaa
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