Caldisphaera lagunensis: Calag_0427
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Entry
Calag_0427 CDS
T02380
Name
(GenBank) 2''-5'' RNA ligase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
clg
Caldisphaera lagunensis
Brite
KEGG Orthology (KO) [BR:
clg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
clg03016
]
Calag_0427
Enzymes [BR:
clg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
Calag_0427
Transfer RNA biogenesis [BR:
clg03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
Calag_0427
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Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
AKAP7_NLS
2_5_RNA_ligase2
Motif
Other DBs
NCBI-ProteinID:
AFZ70195
UniProt:
L0AAY9
LinkDB
All DBs
Position
complement(432326..432883)
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AA seq
185 aa
AA seq
DB search
MVRAFIAVDVNDNSIINKINDTIQALSELSLKIKFVETENLHITLRFLGEISEGDVLTIK
ENVISKLKCEPFNIVLKGLGAFPNNENPRVIWIGISEGFDFLKKLKIQIDDLLIKNGFKL
SHEEFVAHLTIGRIKFGKSSALKELLEQYRNFDYGTIKVNSVKLKKSTLTRQGPIYENLV
EANCK
NT seq
558 nt
NT seq
+upstream
nt +downstream
nt
ttggttagagcatttattgcagtagatgtaaatgataatagtataatcaataaaataaat
gatactattcaggcattaagtgaacttagtttaaaaataaaatttgttgaaacagaaaat
ttgcatataacactaagattcttaggggaaataagcgaaggggatgttttaacaataaaa
gaaaatgtgatcagcaaattaaaatgtgagccattcaatatagttttgaaaggtctaggg
gcattcccaaataatgaaaatccaagggtaatttggataggtatatcagaaggatttgat
tttttgaaaaaactaaaaattcagattgatgatcttttaatcaaaaatggatttaaatta
tcgcatgaagaatttgttgcgcatttaacaataggtagaataaaatttggtaaatccagt
gcattaaaggagttattagaacaatacagaaactttgattatggtacaattaaagtaaat
tcagttaagttgaaaaagagcaccttaacaagacaaggacctatttacgaaaatttagtg
gaggctaattgtaaatga
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