Caldisphaera lagunensis: Calag_0433
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Entry
Calag_0433 CDS
T02380
Name
(GenBank) archaeal exosome-like complex exonuclease 1
KO
K11600
exosome complex component RRP41
Organism
clg
Caldisphaera lagunensis
Pathway
clg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
clg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Calag_0433
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clg03019
]
Calag_0433
Messenger RNA biogenesis [BR:
clg03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
Calag_0433
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
Calag_0433
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-ProteinID:
AFZ70201
UniProt:
L0A8N9
LinkDB
All DBs
Position
complement(436144..436875)
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AA seq
243 aa
AA seq
DB search
MIILARPQRFIDDDGKRLDGRKPDEVRPIKMQVGVLTNADGSALVEYGLTRVLAAVYGPK
ESQKSMLLPDRATLRVRYHMAPFSTEERKNPAPTRRELELSKVLRESLEPVVITEYFPRT
SIDVFIEVLQSDGGTRTVGATAASLALADAGIPMRALVAGVAIGKVDNVLIVDLNEVEDM
YGDADMPVVAAPDIGQITLYQLNGVLTKEEFHNAIDMAMKVITKIVDMEKETLRSSYMEV
GEE
NT seq
732 nt
NT seq
+upstream
nt +downstream
nt
gtgataatattggctagacctcaaagatttattgatgatgatggaaaaagattagatgga
agaaaacctgatgaagtaagaccaataaagatgcaagtaggagttttaactaatgcggat
ggctcagcactagtagaatatggtttaacaagggtgctagcagcagtatacggcccaaaa
gaatctcaaaaatcaatgctattgccagatagagcaactttaagagttaggtaccatatg
gctccattttctacagaagaaaggaagaatcctgcgccaacaagaagagaattagaactt
tctaaagttttaagagaatcattagagcctgttgttataactgaatattttcctagaact
tcaatagatgtatttatagaagttttacaatctgatggaggaactagaaccgttggggca
actgctgcctctcttgcattagcagatgcaggtataccaatgagagcattggtagcaggt
gtagcaattggaaaagttgataatgtattgatagttgatttaaatgaggtggaagatatg
tatggtgatgcggatatgcccgttgtagctgctccagatattggtcaaataaccttatac
caattaaatggagttctaactaaagaagaattccataacgcaattgatatggctatgaag
gttatcacaaaaatagttgatatggaaaaggaaactctaaggagttcatacatggaggtt
ggtgaagaatga
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