Caldisphaera lagunensis: Calag_0669
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Entry
Calag_0669 CDS
T02380
Name
(GenBank) hypothetical protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
clg
Caldisphaera lagunensis
Brite
KEGG Orthology (KO) [BR:
clg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
clg03016
]
Calag_0669
Enzymes [BR:
clg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Calag_0669
Transfer RNA biogenesis [BR:
clg03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Calag_0669
Prokaryotic type
tRNA splicing ligases
Calag_0669
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF2120
DUF4761
Motif
Other DBs
NCBI-ProteinID:
AFZ70418
UniProt:
L0A947
LinkDB
All DBs
Position
653092..654534
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AA seq
480 aa
AA seq
DB search
MPGIEPKKIGDHTWMIEKTGCMKVPSIIYADDVLIEKMKQDMTLNQSINVACLQGIQKYS
LVMPDGHQGYGFPIGGVAAMAIDENGVISPGGVGYDINCGVRLIRTSLSLKDVLPKIKDL
INIIYDNVPSGLGSTGKLKLTNAELDNILNYGAKWAVEKGYGWEKDIDFIEENGAWKLAD
ASKVSNAARKRGSNELGTLGSGNHFLEVQYVDKVFDEKLAKAFGIFENQVTIMIHTGSRG
LGHQVASDYLQIMERAMRRYNTIPPDRELASIPYNSPEAQDYVRAMASAANYAWANRQII
MHWTRESFAQVFKTDPENLGMDLVYDVAHNIAKIEEYDIDGKRKKVVVHRKGATRAFPPG
NKEIPSKYRDYGQPVLIPGSMGTASYILAGVETGVKSWFTAPHGAGRWMSRSSAKRERSY
KEVVDELNKKGIYLKASNVATVIEEMPEAYKNVDNVAETAAAVGIAKLVARMRPIGVTKG
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
ttgccaggaatagagcccaaaaaaattggagatcatacatggatgatagagaaaacagga
tgcatgaaggttccttctataatttatgcagacgatgttttgatagaaaaaatgaagcag
gatatgacattaaatcaatcaattaatgtagcatgcttgcaaggaatacaaaagtatagt
ttagttatgcctgatggccatcaaggttacggatttccaataggaggagttgccgctatg
gctatagatgaaaatggtgttataagtccgggaggggtaggttatgatataaattgtggt
gttagactaataagaacaagtttaagtttaaaagatgttttgcctaagataaaagatctc
ataaacataatttatgataatgttccaagcggtttgggaagtactggtaaattaaagttg
acaaatgctgaattagataacatattaaattatggagcaaaatgggctgttgaaaaaggg
tatggttgggaaaaggatatagattttatagaagaaaatggagcatggaaattagcagat
gcatctaaagtaagcaatgcagcaagaaaaagaggatctaatgaattaggtactttagga
agcggtaatcattttctggaagtacaatatgttgataaggtatttgatgaaaagcttgca
aaggcatttggtatttttgaaaatcaagttacaataatgatccatacaggtagtagaggt
ttagggcatcaggtagcaagcgattatttgcaaataatggaaagggctatgagaagatat
aatacaattcctcctgatagagaacttgcaagtataccttacaattctccagaggctcaa
gattatgtaagagctatggcgtccgcagctaattatgcatgggcaaataggcaaattata
atgcattggacaagagaaagttttgctcaagtatttaagactgatccagaaaatctaggt
atggatttagtatatgacgttgctcataatatagctaagattgaggaatatgatatagat
ggtaaaaggaaaaaagttgttgttcatagaaaaggtgcaacaagagcatttcctccaggg
aataaagaaataccgtcaaaatacagagattatggtcaaccagttttaattcctggtagc
atgggaacagcaagttatattttggctggagttgaaaccggggttaaatcttggtttaca
gcacctcatggtgcaggtagatggatgagtagatcatctgctaagagggaaagatcttat
aaagaagttgttgatgaattaaacaaaaaaggaatttatctaaaggcaagtaatgtagcg
acagtaattgaagagatgccagaagcatataaaaatgttgataatgtagcagaaacggct
gcagctgtagggatagcaaaacttgttgctagaatgagacccataggcgttacaaagggc
tga
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