Caldisphaera lagunensis: Calag_1044
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Entry
Calag_1044 CDS
T02380
Name
(GenBank) tRNA intron endonuclease
KO
K01170
tRNA-intron endonuclease, archaea type [EC:
4.6.1.16
]
Organism
clg
Caldisphaera lagunensis
Brite
KEGG Orthology (KO) [BR:
clg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
clg03016
]
Calag_1044
Enzymes [BR:
clg01000
]
4. Lyases
4.6 Phosphorus-oxygen lyases
4.6.1 Phosphorus-oxygen lyases (only sub-subclass identified to date)
4.6.1.16 tRNA-intron lyase
Calag_1044
Transfer RNA biogenesis [BR:
clg03016
]
Prokaryotic type
tRNA spricing factors
tRNA splicing endonucleases
Calag_1044
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
tRNA_int_endo
tRNA_int_endo_N
tRNA_int_end_N2
Rrp40_N
GalBD_like
Motif
Other DBs
NCBI-ProteinID:
AFZ70766
UniProt:
L0AA75
LinkDB
All DBs
Position
complement(1050738..1051283)
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AA seq
181 aa
AA seq
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MVIRADILNGVVIIKDLNNSRKIYFLGYFGKPINAEKVKVETDITSPLILNSFEALYLME
KGVIDLFYNDKRVNDINEAKKILKINSKKERQYEIYKELRDNGLKVRSGLKYGSDFVAYR
LGPGIEHAPFIIHYYDINENFDPIELVRAGRLSHSVKKDFIISSLKDNGKSLYIIFKWFK
P
NT seq
546 nt
NT seq
+upstream
nt +downstream
nt
atggtaataagagctgatatattaaatggagtagtaataataaaggatttaaataattca
aggaaaatatattttttaggatattttggaaaacctataaatgctgaaaaggtaaaggtg
gaaaccgatataacttcacctcttattttgaattcttttgaagcattgtatttaatggaa
aagggggttatagatttattttataatgataaaagagttaatgatattaatgaggccaaa
aaaattttaaaaattaattcaaaaaaagaaaggcaatatgagatatataaagaattgaga
gataatggtctaaaagtaagatcaggtcttaaatatggatctgattttgttgcatatcga
ttaggtccaggtatagaacatgcaccttttataattcattattatgatataaatgaaaat
tttgatcccatagagttagtaagagccggtagactaagtcatagtgttaaaaaagatttc
ataatttcatcgctaaaagacaatggaaaatctttatacataatatttaaatggtttaaa
ccataa
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