Caldisphaera lagunensis: Calag_1161
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Entry
Calag_1161 CDS
T02380
Name
(GenBank) putative RNA-binding protein (consists of S1 domain and a Zn-ribbon domain)
KO
K07573
exosome complex component CSL4
Organism
clg
Caldisphaera lagunensis
Pathway
clg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
clg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Calag_1161
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clg03019
]
Calag_1161
Messenger RNA biogenesis [BR:
clg03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
Calag_1161
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
Calag_1161
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ECR1_N
Zn_Tnp_IS91
A2L_zn_ribbon
Cas12f1-like_TNB
Zn_ribbon_RPB9
DUF5817
Zn_ribbon_8
HypA
HVO_2753_ZBP
ECR1_N_2
FtrD-like
Rpr2
DUF7130
Zn_ribbon_NOB1
TerY_C
HscB_4_cys
DUF5816
Anti-TRAP
DmmA-like_C
Motif
Other DBs
NCBI-ProteinID:
AFZ70882
UniProt:
L0ACK9
LinkDB
All DBs
Position
complement(1165350..1165982)
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AA seq
210 aa
AA seq
DB search
MYYSLKNNVVVPGEVIAQQEEFVEGEGVYIDTETGYLRSMFLGKIAIDFNNRTISVNSYK
KLKLPKKNSIVLGSVSSVRENIIFVDIYGVIVLYPRPKWEFEFSSPLSGAIISNQVGVDK
FNDLMDIVKPGDIILAKVINSSNPYNLSLKGPQYGVIYSMCSKCGEIMIPQNNDQLKCPK
CGNVEKRKISNLATSKLLKIDMKKTILMSP
NT seq
633 nt
NT seq
+upstream
nt +downstream
nt
atgtattactctttgaaaaataatgttgttgttccaggagaagttattgcacaacaagaa
gaatttgttgaaggtgaaggagtttatatagatactgaaacaggatacctaaggtcaatg
tttttgggtaaaattgctatagactttaataataggacaatatcagtaaattcatataaa
aaactaaaattaccaaagaaaaatagcattgttttaggatcagtttcatctgttagagaa
aatataatatttgttgatatttatggtgtaatagttttatatccaagacctaaatgggag
tttgaattttcaagtccattatctggagcaattatttcaaaccaagttggtgtagataaa
tttaatgatttgatggatattgttaaacctggagatataatattggctaaagtaataaat
tcaagtaatccatataacctttcattaaagggacctcaatatggagtaatttattctatg
tgctctaaatgtggagagattatgataccgcaaaataatgatcaattaaaatgtcccaaa
tgtggtaatgtagaaaaaaggaaaatatctaatttagcaacttctaaattgctaaaaatt
gatatgaagaaaacaatattaatgtcaccatag
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