Caldisphaera lagunensis: Calag_1180
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Entry
Calag_1180 CDS
T02380
Name
(GenBank) AAA family ATPase, CDC48 subfamily
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
clg
Caldisphaera lagunensis
Pathway
clg04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
clg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
Calag_1180
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clg03019
]
Calag_1180
03009 Ribosome biogenesis [BR:
clg03009
]
Calag_1180
04131 Membrane trafficking [BR:
clg04131
]
Calag_1180
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
clg04147
]
Calag_1180
Messenger RNA biogenesis [BR:
clg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
Calag_1180
Ribosome biogenesis [BR:
clg03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
Calag_1180
Membrane trafficking [BR:
clg04131
]
SNARE
SNARE associated proteins
Others
Calag_1180
Autophagy
Aggrephagy
Other aggrephagy associated proteins
Calag_1180
Exosome [BR:
clg04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
Calag_1180
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
AAA_2
AAA_5
AAA_33
TIP49
AAA_22
CDC48_2
AAA_14
AAA_28
RNA_helicase
nSTAND3
Mg_chelatase
IstB_IS21
AAA_18
AAA_24
ABC_tran
Vps4_C
Parvo_NS1
AAA_3
TsaE
AAA_7
DUF815
NPHP3_N
AAA_17
ATPase
Zeta_toxin
AAA_25
AAA_19
PhoH
ATPase_2
bpMoxR
SLFN-g3_helicase
Bac_DnaA
Molydop_binding
AAA_6
Zot
Motif
Other DBs
NCBI-ProteinID:
AFZ70901
UniProt:
L0AAJ3
LinkDB
All DBs
Position
complement(1177565..1179736)
Genome browser
AA seq
723 aa
AA seq
DB search
MMVSEAYRTDTPGRKIVRIDQSTMKKLNIETGDFVKVKSQKSQVIAVVWPLHSEDEDTGI
IRMDGYLRWSLGVSVGDYVEVEKAENVKPAEKIVFAPLEKTEPFTIDFYLSPSDIKEEFI
RKPLTQGELVLVQGEIPLVVVQTKPVDNVYVTDRTIVELRKEPVKENEFPIHRTTRVTWE
DIGDLEEAKERIREIAELPMRHPEVFKRLGIEPPKGILLYGPPGTGKTLLAKALANEIGA
YFTTINGPEIMSKFYGESEERLREVFKEAQENAPSIIFIDEIDAIAPKREEVTGEVEKRV
VAQLLTLMDGMQERGRVIVIGATNRPDDLDPALRRPGRFDREIEIRPPDKKARIEILKVH
TRNVPLSKDVQLEKIAELTNGYTGADLAALVKEAAMASLREFMASGKVDLSKNEAIKPDI
LKNLEVSMKHFTEAMKSIRPSLIREIFVEVPEVHWEDIGGLENVKQELRESVEWPMKYPK
VFSDMGIEPPKGILLFGPPGTGKTLLAKAVATESGANFITIRGPEVLSKWVGESEKAVRK
IFERAREVAPTVVFFDEIDSIAPARGFKSDTSGVTDRIVNQLLTEMDGMIPLSNVVVIAA
TNRPDIIDPALLRPGRFDRLIYVPPPDIESRKQIFKIHLRRVPLANDVSIDKLASITDGY
TGADIAAVVREAVMLKLREKLEVSPVEFRHFEMALKKVPPSLSKDVIMMYERISNQLKKI
ALQ
NT seq
2172 nt
NT seq
+upstream
nt +downstream
nt
ttgatggtatctgaagcatatagaactgatacacctggaagaaaaatagtaaggatcgat
cagtctactatgaaaaagttaaacattgaaacaggagattttgttaaagtaaagagtcaa
aaaagtcaagtaatagcagttgtatggcctttacattctgaagatgaagatacaggtata
attagaatggatggttatttaagatggtcattaggcgtcagtgttggagattatgtagaa
gttgaaaaagcagaaaatgtaaaacctgctgaaaaaattgtttttgctccattagaaaag
actgagccgtttacaattgatttttatttatcaccatcagatataaaagaagaatttatt
agaaagccattaactcaaggagaactcgttttagttcaaggtgaaataccattagttgtt
gtccaaacaaaacctgtggataacgtttatgtaacagataggacaattgttgaactaaga
aaagagcctgttaaagaaaacgaatttccaattcatagaacaactagagtaacatgggaa
gatattggtgatttggaagaagccaaagaaaggataagagaaattgcagagcttcctatg
agacatcctgaagtatttaagaggcttggtattgaacctccaaagggaatcctattatat
ggtcctccaggaacaggtaagacattattagcaaaagccttagcaaatgagataggagct
tacttcacaacaattaatggaccagaaatcatgagtaagttctatggagaaagcgaggaa
agattaagagaggtgtttaaagaagcacaagaaaatgctccatccataatatttatagat
gaaatagatgcaatagctccaaaaagagaggaagtaactggagaagttgaaaaaagagtt
gttgcccaacttttaacgctaatggacggaatgcaggaaaggggtagagttatagttatt
ggagcaacaaatagaccagatgatttagatcctgcattaagaagacctggaagatttgat
agagaaattgaaataaggcctcctgataaaaaggctagaatagaaatacttaaagtacat
acaaggaatgttcctctatctaaagatgtacaattagagaaaatagcagaattaacaaat
ggatatactggggcagatttggctgcattagttaaagaagcagctatggcttcattaaga
gaatttatggcaagtggaaaggttgatttgtcaaaaaatgaagcaattaaacctgatata
ttaaagaaccttgaggtttctatgaaacattttactgaggctatgaaatctattaggcct
tcattaataagggaaatatttgtagaggttccagaagtacattgggaagatattggtggt
ttagaaaatgtaaaacaagaattaagagaatcagtagaatggcctatgaaatatcctaag
gtatttagcgatatgggtattgaacctccaaagggaatcctattatttggtcctccagga
acaggtaagacattattagcaaaagcagttgcaacggaaagtggggctaattttataaca
attagaggtccagaagttttgagcaaatgggttggagaaagcgaaaaagctgtaagaaaa
atatttgaaagagctagagaagtagctccaacagttgttttcttcgatgaaatcgattca
atagctccggcaagaggatttaagagtgatacatccggcgttactgatagaatagttaat
caattgcttacagaaatggatggtatgataccattatctaatgttgttgttatcgctgct
acaaacaggccagatataatagatccagctttgctaagacctggaagatttgatagactt
atatatgtgccacctcccgatattgaatcaagaaagcaaatattcaaaatacatttaagg
agagttccattggcaaacgatgtctctatagataaattggcatcaataacagatggctat
acaggagctgatatagcagcagttgtaagagaagcggttatgctaaaattaagagaaaaa
ctggaggtttcacctgtggaatttagacattttgagatggctttaaagaaggtgcctccc
agcttgtctaaagatgtaataatgatgtatgaaagaatttcaaaccagctcaagaaaata
gcccttcagtaa
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