Caldisphaera lagunensis: Calag_1410
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Entry
Calag_1410 CDS
T02380
Name
(GenBank) AAA family ATPase, CDC48 subfamily
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
clg
Caldisphaera lagunensis
Pathway
clg04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
clg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
Calag_1410
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clg03019
]
Calag_1410
03009 Ribosome biogenesis [BR:
clg03009
]
Calag_1410
04131 Membrane trafficking [BR:
clg04131
]
Calag_1410
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
clg04147
]
Calag_1410
Messenger RNA biogenesis [BR:
clg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
Calag_1410
Ribosome biogenesis [BR:
clg03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
Calag_1410
Membrane trafficking [BR:
clg04131
]
SNARE
SNARE associated proteins
Others
Calag_1410
Autophagy
Aggrephagy
Other aggrephagy associated proteins
Calag_1410
Exosome [BR:
clg04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
Calag_1410
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
CDC48_2
RuvB_N
AAA_16
TIP49
AAA_14
AAA_22
AAA_2
AAA_33
AAA_5
AAA_28
IstB_IS21
nSTAND3
AAA_lid_PRS2_C
Mg_chelatase
RNA_helicase
AAA_7
Sigma54_activat
Vps4_C
AAA_24
PhoH
AAA_18
ABC_tran
Parvo_NS1
DUF815
Zeta_toxin
ATPase
MazE_antitoxin
DPOA2_OB
Motif
Other DBs
NCBI-ProteinID:
AFZ71117
UniProt:
L0ADD0
LinkDB
All DBs
Position
1388653..1390857
Genome browser
AA seq
734 aa
AA seq
DB search
MSEENQSNNSKEIVLRVSEARPRDTGKRRVRIDVDIMKQLNVEPGDIVEIEGKKKTVAVV
WPALPEDQGLDIIRMDGILRKNADINIGDKVIVRKVLPKQAIKVKLAPTVHSISVDEGFK
KYVKKKLVGTPIVEGDVIVVPVIGQAVQLTVIDTRPRGPVIIGEKTSVDVLEKPMAQINV
PKVTYEDIGGLRDIISRIRELVELPLRHPELFARLGIEPPKGVLLFGPPGTGKTLLAKAV
ATESDAYFVAINGPEIMSKFYGESEQRLREIFDEAKKNAPAIIFIDEIDAIAPKRDEVVG
EVERRVVAQLLALMDGLENRGQVIVIGATNRINAVDPALRRPGRFDREIEVPLPDKQGRL
EILQIHTRHMPLDGDVDTERLAEITKGYTGADLAALVKEAAMHALRRYLPEIDIEQEKIP
VEVLEKMVVTMDDFIAAYKEITPSGLREIQVEIPEVHWEDIGGLESLKQELREVVEWPLK
YPNSFKRIGVQPPKGVLLFGPPGTGKTLLAKAVATESGANFITIRGPEVLSKWVGESERA
IREIFKKARQYAPVVVFFDEIDAIAALRGIDEGTRVGERIVSQLLTEIDGITDLQNVVVI
AATNRPEMVDPALIRPGRLEKLVYVPPPDEKGRVEILQIHTRNVPLADDVDLIEIAKRTN
GYTGADLAALVREAAMQALREDLQNGIVKNKHFDVALSKVKPSVTQYMIDYYMKWLESAR
QMNVGKTMSTSITY
NT seq
2205 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaggagaaccaatcaaataattcaaaggaaatcgtattgagagtttctgaagca
aggcctagggatacagggaaaagaagagtaagaatagatgtagatataatgaaacaactt
aatgtagagcccggagatattgtagaaatagaaggcaagaagaaaacagttgctgtagta
tggccagcattaccagaagatcaaggtttagacataattagaatggatggtatattaagg
aaaaatgctgatataaatattggcgataaagttatagttagaaaggttttgccgaaacag
gccataaaagtaaaactcgcaccaacggttcactcaatatcagttgatgaagggtttaaa
aaatatgttaaaaagaaactagttggcactcctattgttgaaggtgatgtaatagttgtt
ccagttataggccaggctgttcaattgacagttattgatacaaggccaagaggacctgtt
ataataggtgaaaagacttcagtagatgtattagaaaagccaatggcccaaattaatgtt
ccaaaggtaacatacgaagatataggtggtttaagagatataatttcaaggataagagaa
ctcgttgaattacctttaagacatccagagctttttgcaaggctcggaatagagccaccc
aaaggagttttattatttggtcctcctggaacaggtaagacactattagcaaaagcagtt
gcaacagaaagtgatgcatattttgttgcaattaatggaccagaaatcatgagtaagttt
tatggagaaagcgagcaaaggttaagagaaatttttgatgaagcaaagaaaaatgctcct
gcaataatatttattgatgaaatagatgcaatagctccaaaaagggatgaagttgtagga
gaagtagaaagaagggttgttgcacaattattggcattaatggacggtcttgaaaataga
ggtcaagtaatagtaattggcgcaactaatagaattaatgctgtagatcctgcattaaga
agacctggtagatttgatagagaaattgaagttccattacctgataagcaaggtagatta
gaaatattgcaaatacatacaaggcatatgcctttagatggtgacgttgatacagagaga
ttagctgagattacaaaaggatatactggagcagatttagcagctttagtaaaagaggca
gcgatgcatgcattgagaagatacttaccagaaattgatatagagcaagaaaagatacca
gtagaggttttagagaaaatggtagtaacaatggatgattttatagcagcatacaaagaa
ataacgccaagtggattaagagaaattcaagtagaaatacctgaagtgcattgggaagat
ataggaggattagaaagtcttaaacaagaattgagagaagtcgttgaatggccattaaaa
tatcctaactcatttaagaggattggagttcagccacccaaaggagttttattatttggt
cctcctggaacaggtaagacactattagcaaaagcagttgcaacagaaagtggggctaat
tttataacaattagaggtccagaagttttgagcaaatgggttggagaaagcgaaagggcc
attagagaaatatttaagaaagcaagacaatatgccccagttgtggtatttttcgatgaa
atagatgcaatcgctgcattaaggggaattgatgaagggacaagagttggtgaaagaata
gtaagtcagttattaacagaaatagatggtataactgatcttcaaaacgtggtagttata
gcagcaacaaataggccagaaatggtagatccagcattaattaggcctggaagattagag
aaactcgtttatgttccacctcctgatgaaaaaggtagagttgagatattgcaaatacat
acaagaaatgtccccttggctgacgatgtcgatttaattgaaatagctaagaggactaat
ggatatactggagcagatttagcagctttagttagggaagctgcaatgcaggcattaaga
gaagatttgcaaaatggaattgttaaaaataaacacttcgatgttgcattgtcaaaagta
aaaccaagtgttacacaatatatgatagattattacatgaagtggcttgaaagcgcaagg
caaatgaatgtaggaaaaactatgtctacatcaataacttattaa
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