Cellulophaga lytica HI1: IX49_01320
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Entry
IX49_01320 CDS
T03279
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
clh
Cellulophaga lytica HI1
Pathway
clh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
clh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IX49_01320
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clh03019
]
IX49_01320
03009 Ribosome biogenesis [BR:
clh03009
]
IX49_01320
Enzymes [BR:
clh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
IX49_01320
Messenger RNA biogenesis [BR:
clh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
IX49_01320
Ribosome biogenesis [BR:
clh03009
]
Prokaryotic type
rRNA helicases
IX49_01320
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AIM59234
LinkDB
All DBs
Position
301511..303319
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AA seq
602 aa
AA seq
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MTKFEALGLDKSLLDAIVDLGFESPSEVQEKAIPILLNEDTDLVALAQTGTGKTAAFGFP
LIQKIDSSSRTTQGLILSPTRELCLQITNELKAYSKYEKGLNVVAIYGGASITDQANQIR
RGAQIVVATPGRIKDMISRGMVNISKLDYCVLDEADEMLNMGFYEDIKDILSNTPDEKFT
WLFSATMPREVSTIAKKFMHNPQEITVGSKNAGATTVQHEYYVVGGRDRYPALKRLADTN
PDIFSVVFCRTKRDTQRVAEKLIEDGYNAGALHGDLSQNQRDLVMNAFRKKQIQMLVATD
VAARGIDVDDITHVINYQLPDEIETYTHRSGRTGRAGKSGVSMVIVTRSELRKIKALERK
LQTEFLSKKIPTGMEICEIQLHHLANKIKDTEINDEVESYLPAINEILEGVDKEDLIKKI
VSVEFTRFFDYYNKTRDLNGSDRGERGDREERGKNKAEIPTSGSVRYFINVGERDDYDWM
TLKDFLRNTVGLGKEDVFKVDVKESFSFFNTDAEHSEKVLSTFTEFKVDGRFVNVEISNN
PGGGGGRGRGGRGRGDRGRSSSSRGGRDNRSGGDRGRSRNRDNRGSRDSGGSYGNKRSKR
RY
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaatttgaagcattagggctagacaagtccctacttgatgctattgtagatctt
gggtttgaatcaccttcagaagtacaagaaaaagcaattccaatccttttaaatgaagac
acagacctagttgcattagcgcaaacaggtactggtaaaactgcagcttttggttttccg
ttaattcagaaaattgattctagcagcagaactactcaaggattaatactttcaccaaca
cgtgaactttgtttacaaattacaaacgagcttaaagcgtattctaaatacgaaaaagga
cttaacgtagttgcaatttacggtggtgctagtattacagaccaagcaaaccaaattaga
agaggagcacaaatagttgttgctactcctggtagaataaaagatatgattagccgtggt
atggttaacatttctaaattagattactgcgtattggatgaagcagatgaaatgttaaat
atgggcttctatgaagacattaaagacattttatctaacactccagatgaaaaatttact
tggttattctctgcaactatgccaagagaagtatctaccattgctaaaaaattcatgcac
aacccacaagaaattactgtgggatctaaaaacgctggtgcaactacagtacaacatgag
tattatgttgttggtggtagagatagataccctgcattaaaaagattagcagatactaac
cctgatattttctctgttgttttttgtagaacaaaaagagatacacaaagggttgccgaa
aaattaattgaagacggttacaatgctggtgctttacacggagatttaagtcaaaaccaa
agagatttggtaatgaacgccttccgtaaaaaacaaatacaaatgcttgttgcaacagat
gttgctgcacgtggtatagatgtagatgatattacgcacgtaataaactaccaattacct
gatgaaatagaaacatacacacaccgtagtggacgtactggtagagctggtaaatctggt
gtatctatggttattgtaactcgtagtgagttacgtaaaataaaagccttagagagaaag
ctacaaactgaatttttatcaaaaaagattccaaccggaatggaaatttgtgaaattcaa
ttgcaccatttagccaataaaattaaagatacagagattaatgatgaagtagaaagctac
ttacctgctattaatgaaatattagaaggtgtagataaagaagatcttattaaaaagatt
gtatctgtagagtttactcgtttctttgattactacaacaaaactagagacttaaatggc
tctgaccgtggagaaagaggagatcgtgaggagcgtggtaaaaacaaagcagaaatacct
acaagtggttctgtacgttactttattaatgttggtgagcgtgatgattacgattggatg
acattaaaagatttcttaagaaatactgttggtcttggtaaagaagatgtttttaaagta
gacgtaaaagagagtttctctttctttaacacagatgcagaacattctgaaaaagtatta
agtacttttactgaatttaaggtagatggcagatttgttaatgttgaaatctctaacaat
cctggaggcggtggtggccgtggaagaggcggtagaggtcgcggagacagaggccgttct
tcttcttctcgtggaggaagagataacagaagtggcggagacagaggtcgttctcgtaac
agagacaacagaggaagccgcgatagtggtggaagctacggaaacaaaagaagcaaaaga
agatactaa
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