Cellulophaga lytica HI1: IX49_02330
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Entry
IX49_02330 CDS
T03279
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
clh
Cellulophaga lytica HI1
Pathway
clh03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
clh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
IX49_02330
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
clh03021
]
IX49_02330
03400 DNA repair and recombination proteins [BR:
clh03400
]
IX49_02330
Enzymes [BR:
clh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
IX49_02330
Transcription machinery [BR:
clh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
IX49_02330
DNA repair and recombination proteins [BR:
clh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
IX49_02330
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AIM59420
LinkDB
All DBs
Position
complement(531105..535403)
Genome browser
AA seq
1432 aa
AA seq
DB search
MARPKDNNTIKRFDKISIGLASPEAILAESRGEVLKPETINYRTHKPERDGLFCERIFGP
VKDYECACGKYKRIRYRGIVCDRCGVEVTEKKVRRDRVGHINLVVPVAHIWYFRSLPNKI
GYLLGLPSKKLDMIIYYERYVVIQPGIAKGPEGEEIQKMDFLTEEEYLNILESIPVENQY
LEDTDPNKFIAKMGAECLIELLSRINLDELSFELRHKANTETSKQRKTEALKRLQVVESL
RESQENRENRPEWMIMKVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLV
EIKAPEVILRNEKRMLQESVDSLFDNTRKSSAVKTESNRPLKSLSDSLKGKQGRFRQNLL
GKRVDYSARSVIVVGPELKLFECGLPKDMAAELYKPFVIRKLIERGIVKTVKSAKKIIDK
KEPVVWDILENVLKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIRLHPLVCTAFNADFDG
DQMAVHLPLGPEAILEAQLLMLASHNILNPANGSPITVPSQDMVLGLYYMTKERKSTPEV
PIKGEGLTFYSDEEVVIAFNEGRLDLNAGIKVRAKDFNEEGELVYQIIPTTTGRVLFNMM
VPEQAGYINDVLNKKSLRDIIGGILAVTDVPTTAEFLDKIKTLGYEFAFKGGLSFSLGDI
IIPKEKHEMIAEANGQVDGIMANYNMGLITNNERYNQVIDVWTSTNAMLTELAMKRIRED
QQGFNSVYMMLDSGARGSKEQIRQLTGMRGLMAKPKKSTAGGGEIIENPILSNFKEGLSI
LEYFISTHGARKGLADTALKTADAGYLTRRLVDVSQDVIINTEDCGTLRGIEVSALKKNE
EIVESLGARILGRISLHDLFDPVTEEQLLSAGQLIVESDVKKIEASPIESVEVRSALTCE
AEKGICGKCYGRNLSTNKMVQRGEAVGVVAAQSIGEPGTQLTLRTFHVGGIAGNISEDNK
LEAKFAGIAEIEDLRTVNGEDNEGNKVKIVISRTSEIKIVDAKTGITLSTSNIPYGSQLA
IENGAKVAKGDVICSWDPYNGVIVSEFTGKVSYENIEQGVTYQVEIDEQTGFQEKVISES
RNKKLIPTLLVKNNNDEILRSYNLPVGSHIMVDDNDKVTEGMTLVKIPRKSAKSGDITGG
LPRVTELFEARNPSNPAVVSEIDGVVSFGKIKRGNREIIIESKLGDVKKYLVKLSNQILV
QENDYVRAGMPLSDGSITPADILAIKGPSAVQQYLVNEVQEVYRLQGVKINDKHFEVVVR
QMMRKVRIQDPGDTIFLENQLAHKEDFIRENDEIYGKKVVEEAGDSDNLKAGQIITAREL
RDENSILRRADKALVSARDAVAATATPILQGITRASLQTKSFISAASFQETTKVLNEAAV
AGKVDNLEGLKENVIVGHKIPAGTGMRDYDSIIVGSKEEYDEIMARKEELKF
NT seq
4299 nt
NT seq
+upstream
nt +downstream
nt
atggctagaccaaaggataataatacaataaaaaggttcgataaaatttcaatcggattg
gcatctccagaagctattttggcagagtcaagaggggaagttttaaaacctgaaacaatt
aattatagaacccacaaaccagaaagggatggtcttttctgtgagcgtatttttggccct
gtaaaggattatgagtgtgcctgtggtaaatacaaacgtatccgttaccgtggtattgtt
tgtgaccgttgtggggtagaggttacagaaaagaaagtacgtagagacagagttgggcac
attaacttagtagttcctgttgctcacatctggtacttccgttctttaccaaataaaata
ggttacttattaggattaccttctaagaaattagacatgatcatctattatgagcgttat
gttgtaattcagccaggtattgctaaaggaccagaaggtgaagaaattcagaaaatggat
ttcttgactgaagaagaatacttaaacatactagagtctataccagtagaaaaccaatat
ttggaagatacagatccaaataagtttattgctaaaatgggtgctgaatgtttaatagaa
ttattgtcaagaattaacttagacgaattgtcatttgagttaagacataaggcaaataca
gaaacatctaaacaacgtaaaactgaagcgttaaagcgtttacaggttgtagaatcatta
agggagtctcaagaaaatagagaaaacagacctgagtggatgattatgaaagtaatccca
gttattccaccagagcttagacctttagtgccattagatggtggtcgttttgcaacatca
gatttaaatgatttatatagaagagtaataatcagaaacaatcgtttaaaaagattggta
gagataaaggctccagaagtaattcttagaaatgagaaacgtatgcttcaggaatctgta
gattctctttttgataatacacgtaaatcatcagcggtaaaaactgaatctaatagacca
ttaaaatcattatcagattctttaaaaggtaaacaagggcgtttccgtcaaaacctatta
ggtaaacgtgtagattattctgctcgttcggtaattgttgttgggccagaattgaagtta
tttgagtgtggtttaccaaaagatatggctgcagagctttacaaaccttttgttatacgt
aagttaatagaaagaggtattgtaaaaacagttaaatctgctaagaaaattatagataaa
aaagagccagtagtttgggatattttggaaaacgttcttaaaggacacccagtattacta
aaccgtgctcctacgcttcaccgtttaggtatacaggcatttcagccaaaacttatagaa
ggtaaagctatccgtttacacccattagtatgtacggcatttaacgccgattttgatggg
gatcaaatggcagtacacttaccattaggtccagaagcaattttggaagctcagttgtta
atgcttgcatcacacaacatattaaaccctgctaatggttcaccaataacagtaccttct
caggatatggttttaggtctttattatatgactaaagaacgtaaatctactccagaggtg
ccaattaaaggtgaagggttaactttctattctgatgaagaagttgtaatagcttttaat
gagggaagacttgatttaaatgcaggtataaaagtaagagcaaaagactttaatgaagaa
ggagaacttgtataccaaataatacctactacaacaggtagagttttatttaatatgatg
gtgccagaacaggcaggttatattaatgatgtattaaataaaaaatctttaagagatatt
attggtggtattttggctgttacagacgtgccaactactgcagaattcttagataagata
aaaactttaggatatgaatttgcctttaaaggtggtttatcttttagtttaggagatatt
attatccctaaagaaaaacacgaaatgattgcagaggctaacggtcaagtagacggtatt
atggctaactacaacatgggtcttattactaacaatgagcgttacaaccaggtaattgat
gtttggacatctaccaatgcaatgcttacagagttagcaatgaagcgtattcgtgaagat
cagcaaggatttaactctgtgtatatgatgttagattctggtgcaaggggttctaaagag
caaattcgtcagttaactggtatgcgtggattaatggctaagcctaaaaaatctactgca
ggtggtggtgaaattattgaaaaccctattctttctaactttaaggaaggtttatcaatt
cttgaatactttatttctactcacggtgcacgtaaaggtcttgcagataccgctttaaaa
actgccgatgcggggtatttaactcgtcgtttggttgatgtatcacaagatgttatcatt
aacacagaagactgtggaacattaagaggtatagaagtttcagctttaaagaaaaacgaa
gaaatagttgaatctttaggagctcgtattctaggtagaatttcactacatgatttattt
gatcctgtaacggaagaacaattattatctgctggtcagttaatagtagagtctgatgtt
aagaaaattgaagcatcaccaatagagagcgtagaagtacgttctgcattaacttgtgag
gcagaaaaaggaatttgtggtaaatgttatggtcgtaacctttcaaccaataaaatggta
caaagaggtgaggctgtaggtgttgttgctgcacagtctattggagagccaggtacacag
ttaacactacgtacattccacgtgggtggtattgcaggtaacatttctgaggataataaa
ttagaagctaaatttgcaggtattgcagaaatagaagatttaagaactgttaatggtgaa
gataatgagggtaacaaagtaaaaattgttatctctagaacatcagaaataaaaatagtt
gatgctaaaacaggtattactttaagtacaagtaacataccttacggttctcaactagct
atagaaaacggagctaaagttgctaaaggtgatgtaatatgttcttgggatccatataac
ggtgtaattgtatcagaatttactggtaaagtttcatacgaaaatatagaacaaggtgtt
acttaccaggtagagatagatgaacaaacaggtttccaggaaaaagtaatttcagaatct
agaaacaagaagttaataccaacattattagttaaaaataataatgatgagatattacgt
tcttacaaccttccagttggatctcacattatggtagatgacaatgataaggttactgag
ggtatgacgttagttaaaattccacgtaagtctgctaagtctggtgatattacgggtggt
cttccaagagttacagaacttttcgaagcacgtaacccatctaacccagcagttgtttca
gaaattgatggtgttgtttcttttggtaaaattaaaagaggtaaccgtgaaattattata
gagtctaaattaggtgatgttaaaaagtacttagtaaaactatcaaatcaaattcttgta
caagaaaatgattatgttagagctggtatgccattatctgatggatctataacacctgca
gatatcttagcaattaaaggcccttctgctgtacaacaatacttagtgaacgaagttcag
gaagtatatcgtttacaaggtgtaaaaattaatgacaagcactttgaggttgttgttaga
caaatgatgcgtaaagttcgtatacaagatccgggtgatactattttcttagaaaaccaa
ttggcacataaagaagattttatcagagagaatgatgagatttacggtaaaaaagttgtt
gaagaggcaggagattctgataacttaaaagctggacaaataataacagctagagagtta
agagatgaaaactcaatcttgagacgtgctgataaagcattagtatctgctagagatgct
gttgcagcaactgcaacaccaattttacaaggtattacaagagcatctttacaaactaaa
tctttcatctcagcggcatcgttccaggagacaactaaagtattaaacgaggcagcagta
gctggtaaggttgataacttagaaggattaaaagaaaatgtaattgttggtcataagatt
cctgcaggaacaggtatgagagattatgatagcatcatagtaggttctaaagaagaatat
gatgagattatggctcgtaaagaggaacttaaattttaa
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