Cellulophaga lytica HI1: IX49_03050
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Entry
IX49_03050 CDS
T03279
Name
(GenBank) RNA polymerase sigma factor rpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
clh
Cellulophaga lytica HI1
Pathway
clh02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
clh00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
IX49_03050
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
clh03021
]
IX49_03050
Transcription machinery [BR:
clh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
IX49_03050
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r3
Sigma70_r1_2
Sigma70_r4_2
YonA_C
DUF7443
Motif
Other DBs
NCBI-ProteinID:
AIM59549
LinkDB
All DBs
Position
680360..681223
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AA seq
287 aa
AA seq
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MRQLKITKQVTNRETASLDKYLQEIGKVDLITADEEVELAQRIKAGDQVALEKLTKANLR
FVVSVAKQYQNQGLTLPDLINEGNLGLIKAAQRFDETRGFKFISYAVWWIRQSILQALAE
QSRIVRLPLNKIGSINKINKTFAFLEQAHERKPSAEEIAKELDMTIEDVKQSLKNSGRHV
SMDAPLIDGEDSNLYDVLRSGESPNPDRELLIESLRTEIERALETLTPREADVIRLYFGL
AEQHSMTLEEIGETFDLTRERVRQIKEKAIRRLKHTSRSKILKTYLG
NT seq
864 nt
NT seq
+upstream
nt +downstream
nt
atgagacagcttaaaattacaaaacaggttaccaacagggaaaccgcatcgctagataaa
tatttacaagaaattggtaaggtagacttaattactgccgatgaagaagtagaattagca
cagcgaattaaagcgggagaccaagtagccttagaaaaattaactaaagccaaccttagg
ttcgtagtttctgttgctaagcaataccaaaatcagggtttaacattaccagatttaatt
aatgaaggtaatttaggtcttataaaagctgcgcaacgttttgatgaaactcgtggattt
aaatttatctcttatgctgtttggtggattcgtcaatccatattacaagcattagcagaa
caatctcgtattgtacgtttacctcttaacaaaattggatccataaacaaaattaataaa
acttttgcttttctagagcaagcacatgagcgtaagccatctgcagaggaaattgcaaag
gaattagatatgaccattgaagacgttaagcagtctctaaaaaattctggccgtcacgta
tctatggatgctccattaattgatggtgaagattctaacctttatgatgttttacgtagt
ggcgagtctcctaatccagacagagaattattaattgaatctttacgcactgaaatagaa
cgtgctttagaaacattaacacctagggaagcagacgttattcgtttatactttggttta
gcagaacaacactctatgactttagaagaaattggagaaacttttgatttaactagagaa
agagtaagacaaattaaagaaaaagcaattagaagacttaaacacacttctagaagcaaa
attttaaaaacatatcttggataa
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