Cellulophaga lytica HI1: IX49_09110
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Entry
IX49_09110 CDS
T03279
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
clh
Cellulophaga lytica HI1
Pathway
clh03030
DNA replication
clh03410
Base excision repair
clh03420
Nucleotide excision repair
clh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
clh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
IX49_09110
03410 Base excision repair
IX49_09110
03420 Nucleotide excision repair
IX49_09110
03440 Homologous recombination
IX49_09110
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
clh03032
]
IX49_09110
03400 DNA repair and recombination proteins [BR:
clh03400
]
IX49_09110
Enzymes [BR:
clh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
IX49_09110
DNA replication proteins [BR:
clh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
IX49_09110
DNA repair and recombination proteins [BR:
clh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
IX49_09110
NER (nucleotide excision repair)
GGR (global genome repair) factors
IX49_09110
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
HHH_2
RNase_H_2
HHH
HHH_5
NYN_YacP
Motif
Other DBs
NCBI-ProteinID:
AIM60671
LinkDB
All DBs
Position
complement(2020629..2023469)
Genome browser
AA seq
946 aa
AA seq
DB search
MADQKRLFLLDAYALIFRGYYAFIKNPRINSKGLDTSAILGFTNSLLDVIKRERPDHLAV
CFDRGGSVDRVEMFEAYKANRDATPEAIKLAIPYIENILKAMHIPVVVKEGYEADDIIGT
LAKKAEKENYKVFMVTPDKDFAQLVSENIFMYRPMFGGGYETWGIPEVLKKFEIERPEQV
IDYLGMMGDSVDNIPGLPGVGEKTAKKFLATYGSMENLLDNTHELKGKMKEKIEANKELG
LLSKKLARIMLDVPVDFNEKEYELDQPDLPKVTEIFEELEFRRLADNLIKTFATETTTNS
ETNTEKSSKKTAKTSTAGAGQFSLFSGGGSASATQVQQELSSRKTSKDIPHIYQSVAPGM
AMKLFLQNLMKQTSVCFDTETTGLNPLTAELVGIAFSWEASKGFYIPFPEDQDQAQELIE
QLRPFFEDEKIEKIGQNLKYDIKVLRKYNLIIKGAYFDTMLAHYLINPDMRHNMDVLAET
YLNYTPISITELIGKKGKNQLSMRQVPIEKQTEYAVEDADITYQLASHFKPELKDAKTEE
LFNDIEIPLLSVLADMELEGINLDVDFLNSLSEELNTDIKNLETSIYEAAGEEFNIASPK
QLGEILFGKLKLVDKPKKTKTGQYSTAEDVLSYLAQDHEIIKNILEYRGLAKLKSTYIDA
LPDQVEESTGRVHTDYMQTVAATGRLSSNNPNLQNIPIRTERGRQVRKAFVPRDENYTLL
AADYSQIELRIIAALSDETTMIEAFKNGEDIHASTASKVFNVPLDQVTREQRSNAKTVNF
GIIYGVSAFGLSNQTDLSRGESKELIDAYYETYPKLKKYMSELVDFARDNGYVQTVLGRR
RYLKDINSRNAVVRSAAERNAVNAPIQGSAADIIKIAMINIHKKLTGGNFKTKMLLQVHD
ELVFDAHKTELEEVRALIKTEMENAYSLAVPLDVEIGTGDNWLVAH
NT seq
2841 nt
NT seq
+upstream
nt +downstream
nt
atggcagatcaaaaaagactttttttactagatgcatatgcacttatttttagaggatat
tatgcatttataaaaaacccaagaataaactctaaaggactagacacatcagcaatatta
ggttttacaaactctttattagacgtaataaaaagagaaagaccagaccatttagctgta
tgttttgatcgtggcggcagcgtagaccgcgtagaaatgtttgaagcttacaaagccaac
cgcgatgccacaccagaagccataaaacttgccattccctatatagaaaatattttaaaa
gcaatgcacatacctgttgttgtaaaagaagggtatgaggcagatgacattataggcaca
cttgccaaaaaagcagaaaaagaaaactacaaagtgtttatggttacaccagataaagac
tttgcgcaattggtttctgaaaatatttttatgtacagaccaatgtttggtggcggatat
gaaacttggggaataccagaagtattaaaaaagtttgaaattgaaagaccagaacaggtt
atagactacttggggatgatgggagactctgtagacaacatcccaggactaccaggtgtt
ggagaaaaaacagctaaaaagtttcttgctacctacggaagcatggaaaacttactagac
aatacccacgaactaaaaggaaaaatgaaagaaaagatagaagccaataaagaattaggc
ttactctctaaaaagctagctcgtattatgctagatgttcctgtagattttaatgaaaaa
gaatatgaattagaccaaccagaccttccaaaagttactgaaatttttgaagaattagag
ttcagaagacttgcagataaccttattaaaacatttgctacagaaactacaaccaactcc
gaaaccaatactgaaaaatcatctaaaaaaacagcaaaaacaagtactgcaggagcaggc
cagttttcattgtttagcggtggcggtagtgcttctgcaacacaagtacaacaagagctt
tctagcagaaaaacaagtaaagacattccgcacatataccaaagtgttgctccaggaatg
gctatgaaattgtttttacagaatttaatgaaacaaacatccgtttgttttgacacagaa
acaacagggttaaatccgctaacagcagaattagtaggaattgctttttcatgggaagca
agtaaaggtttttacatcccttttcctgaagaccaagaccaagcccaggaactaatagag
caattacgtccgttttttgaagatgaaaaaattgaaaaaattggtcagaatttaaaatat
gatataaaagttttacgcaaatacaaccttattattaaaggagcatattttgacactatg
ttagctcactatctaataaatcctgatatgagacacaatatggatgtattagcagaaaca
tacttaaactacacccctatttctattacagaattaattggtaaaaaaggtaaaaatcaa
ttatctatgcgccaagttccaatagaaaaacaaacagagtatgcagttgaagatgcagac
attacttaccaattagctagtcattttaaaccagagttaaaagatgctaaaacagaagag
ttatttaacgacattgaaattccactactaagtgttttagcagatatggagttagaaggt
ataaacctagatgttgattttttaaactcactatctgaagagctaaatacagatattaaa
aatctagaaactagcatttatgaagccgctggggaagaatttaatattgcatcaccaaaa
caattaggagaaatactttttggaaaactaaaacttgtagacaagcctaaaaaaacaaaa
acaggtcagtattccaccgcagaagatgtactatcataccttgcacaagaccatgagata
attaaaaacattttagaatacagaggacttgctaagcttaaaagcacatacattgacgca
ttaccagaccaagtagaagaaagtactggacgcgtacacacagattatatgcaaacagtt
gccgctacaggaagactaagtagtaacaaccctaatttacaaaacatacctatacgcaca
gaacgcggaagacaagtacgcaaagcgtttgttcctagagatgaaaactacacactactt
gcagcagattactcacaaatagaactacgtattattgcagctttaagtgatgaaacaaca
atgattgaagcatttaaaaacggagaagacattcatgcctctacagcttcaaaagtattt
aacgttcctttagaccaagttacaagagagcaacgtagcaacgctaagacagtaaacttt
ggaattatttacggtgtttctgcttttggactaagcaaccagacagatttaagcagagga
gaatctaaagagcttatagatgcttattatgaaacctacccaaaacttaaaaaatacatg
agtgagttggtagattttgcaagagacaacggttacgtacaaacagttttaggaagacgt
aggtatttaaaagatattaactctagaaatgccgtagtacgtagcgcagcagaacgtaat
gccgttaacgccccaatacaaggtagcgctgcagatattataaaaattgcaatgataaac
attcacaaaaaacttactggaggcaattttaaaacaaaaatgcttttacaagtacatgat
gaacttgtttttgatgctcacaaaacagaactagaagaagtaagagcacttattaaaaca
gaaatggaaaatgcatactcacttgcagttcctttagatgtagaaataggaacaggagac
aactggctagttgcccattaa
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