KEGG   Cellulophaga lytica HI1: IX49_09110
Entry
IX49_09110        CDS       T03279                                 
Name
(GenBank) DNA polymerase I
  KO
K02335  DNA polymerase I [EC:2.7.7.7]
Organism
clh  Cellulophaga lytica HI1
Pathway
clh03030  DNA replication
clh03410  Base excision repair
clh03420  Nucleotide excision repair
clh03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:clh00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    IX49_09110
   03410 Base excision repair
    IX49_09110
   03420 Nucleotide excision repair
    IX49_09110
   03440 Homologous recombination
    IX49_09110
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:clh03032]
    IX49_09110
   03400 DNA repair and recombination proteins [BR:clh03400]
    IX49_09110
Enzymes [BR:clh01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     IX49_09110
DNA replication proteins [BR:clh03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     IX49_09110
DNA repair and recombination proteins [BR:clh03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA polymerase I
     IX49_09110
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     IX49_09110
SSDB
Motif
Pfam: DNA_pol_A 5_3_exonuc_N DNA_pol_A_exo1 5_3_exonuc HHH_2 RNase_H_2 HHH HHH_5 RecR_HhH
Other DBs
NCBI-ProteinID: AIM60671
LinkDB
Position
complement(2020629..2023469)
AA seq 946 aa
MADQKRLFLLDAYALIFRGYYAFIKNPRINSKGLDTSAILGFTNSLLDVIKRERPDHLAV
CFDRGGSVDRVEMFEAYKANRDATPEAIKLAIPYIENILKAMHIPVVVKEGYEADDIIGT
LAKKAEKENYKVFMVTPDKDFAQLVSENIFMYRPMFGGGYETWGIPEVLKKFEIERPEQV
IDYLGMMGDSVDNIPGLPGVGEKTAKKFLATYGSMENLLDNTHELKGKMKEKIEANKELG
LLSKKLARIMLDVPVDFNEKEYELDQPDLPKVTEIFEELEFRRLADNLIKTFATETTTNS
ETNTEKSSKKTAKTSTAGAGQFSLFSGGGSASATQVQQELSSRKTSKDIPHIYQSVAPGM
AMKLFLQNLMKQTSVCFDTETTGLNPLTAELVGIAFSWEASKGFYIPFPEDQDQAQELIE
QLRPFFEDEKIEKIGQNLKYDIKVLRKYNLIIKGAYFDTMLAHYLINPDMRHNMDVLAET
YLNYTPISITELIGKKGKNQLSMRQVPIEKQTEYAVEDADITYQLASHFKPELKDAKTEE
LFNDIEIPLLSVLADMELEGINLDVDFLNSLSEELNTDIKNLETSIYEAAGEEFNIASPK
QLGEILFGKLKLVDKPKKTKTGQYSTAEDVLSYLAQDHEIIKNILEYRGLAKLKSTYIDA
LPDQVEESTGRVHTDYMQTVAATGRLSSNNPNLQNIPIRTERGRQVRKAFVPRDENYTLL
AADYSQIELRIIAALSDETTMIEAFKNGEDIHASTASKVFNVPLDQVTREQRSNAKTVNF
GIIYGVSAFGLSNQTDLSRGESKELIDAYYETYPKLKKYMSELVDFARDNGYVQTVLGRR
RYLKDINSRNAVVRSAAERNAVNAPIQGSAADIIKIAMINIHKKLTGGNFKTKMLLQVHD
ELVFDAHKTELEEVRALIKTEMENAYSLAVPLDVEIGTGDNWLVAH
NT seq 2841 nt   +upstreamnt  +downstreamnt
atggcagatcaaaaaagactttttttactagatgcatatgcacttatttttagaggatat
tatgcatttataaaaaacccaagaataaactctaaaggactagacacatcagcaatatta
ggttttacaaactctttattagacgtaataaaaagagaaagaccagaccatttagctgta
tgttttgatcgtggcggcagcgtagaccgcgtagaaatgtttgaagcttacaaagccaac
cgcgatgccacaccagaagccataaaacttgccattccctatatagaaaatattttaaaa
gcaatgcacatacctgttgttgtaaaagaagggtatgaggcagatgacattataggcaca
cttgccaaaaaagcagaaaaagaaaactacaaagtgtttatggttacaccagataaagac
tttgcgcaattggtttctgaaaatatttttatgtacagaccaatgtttggtggcggatat
gaaacttggggaataccagaagtattaaaaaagtttgaaattgaaagaccagaacaggtt
atagactacttggggatgatgggagactctgtagacaacatcccaggactaccaggtgtt
ggagaaaaaacagctaaaaagtttcttgctacctacggaagcatggaaaacttactagac
aatacccacgaactaaaaggaaaaatgaaagaaaagatagaagccaataaagaattaggc
ttactctctaaaaagctagctcgtattatgctagatgttcctgtagattttaatgaaaaa
gaatatgaattagaccaaccagaccttccaaaagttactgaaatttttgaagaattagag
ttcagaagacttgcagataaccttattaaaacatttgctacagaaactacaaccaactcc
gaaaccaatactgaaaaatcatctaaaaaaacagcaaaaacaagtactgcaggagcaggc
cagttttcattgtttagcggtggcggtagtgcttctgcaacacaagtacaacaagagctt
tctagcagaaaaacaagtaaagacattccgcacatataccaaagtgttgctccaggaatg
gctatgaaattgtttttacagaatttaatgaaacaaacatccgtttgttttgacacagaa
acaacagggttaaatccgctaacagcagaattagtaggaattgctttttcatgggaagca
agtaaaggtttttacatcccttttcctgaagaccaagaccaagcccaggaactaatagag
caattacgtccgttttttgaagatgaaaaaattgaaaaaattggtcagaatttaaaatat
gatataaaagttttacgcaaatacaaccttattattaaaggagcatattttgacactatg
ttagctcactatctaataaatcctgatatgagacacaatatggatgtattagcagaaaca
tacttaaactacacccctatttctattacagaattaattggtaaaaaaggtaaaaatcaa
ttatctatgcgccaagttccaatagaaaaacaaacagagtatgcagttgaagatgcagac
attacttaccaattagctagtcattttaaaccagagttaaaagatgctaaaacagaagag
ttatttaacgacattgaaattccactactaagtgttttagcagatatggagttagaaggt
ataaacctagatgttgattttttaaactcactatctgaagagctaaatacagatattaaa
aatctagaaactagcatttatgaagccgctggggaagaatttaatattgcatcaccaaaa
caattaggagaaatactttttggaaaactaaaacttgtagacaagcctaaaaaaacaaaa
acaggtcagtattccaccgcagaagatgtactatcataccttgcacaagaccatgagata
attaaaaacattttagaatacagaggacttgctaagcttaaaagcacatacattgacgca
ttaccagaccaagtagaagaaagtactggacgcgtacacacagattatatgcaaacagtt
gccgctacaggaagactaagtagtaacaaccctaatttacaaaacatacctatacgcaca
gaacgcggaagacaagtacgcaaagcgtttgttcctagagatgaaaactacacactactt
gcagcagattactcacaaatagaactacgtattattgcagctttaagtgatgaaacaaca
atgattgaagcatttaaaaacggagaagacattcatgcctctacagcttcaaaagtattt
aacgttcctttagaccaagttacaagagagcaacgtagcaacgctaagacagtaaacttt
ggaattatttacggtgtttctgcttttggactaagcaaccagacagatttaagcagagga
gaatctaaagagcttatagatgcttattatgaaacctacccaaaacttaaaaaatacatg
agtgagttggtagattttgcaagagacaacggttacgtacaaacagttttaggaagacgt
aggtatttaaaagatattaactctagaaatgccgtagtacgtagcgcagcagaacgtaat
gccgttaacgccccaatacaaggtagcgctgcagatattataaaaattgcaatgataaac
attcacaaaaaacttactggaggcaattttaaaacaaaaatgcttttacaagtacatgat
gaacttgtttttgatgctcacaaaacagaactagaagaagtaagagcacttattaaaaca
gaaatggaaaatgcatactcacttgcagttcctttagatgtagaaataggaacaggagac
aactggctagttgcccattaa

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