Cellulophaga lytica HI1: IX49_10795
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Entry
IX49_10795 CDS
T03279
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
clh
Cellulophaga lytica HI1
Pathway
clh03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
clh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
IX49_10795
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
clh03021
]
IX49_10795
03400 DNA repair and recombination proteins [BR:
clh03400
]
IX49_10795
Enzymes [BR:
clh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
IX49_10795
Transcription machinery [BR:
clh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
IX49_10795
DNA repair and recombination proteins [BR:
clh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
IX49_10795
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
RNA_pol_L_2
Fungal_KA1
Motif
Other DBs
NCBI-ProteinID:
AIM60987
LinkDB
All DBs
Position
2395079..2396071
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AA seq
330 aa
AA seq
DB search
MALLNFQKPDKVIMIDSTDFEGKFEFRPLEPGYGLTVGNALRRVLLSALEGFAITSVRMD
KVEHEFSVIPGVVEDVTEMILNLKQVRFKRQIEDVEAETVSISVSGKNQLTAGDFQKFIS
GYQVLNPDLVICNMDAKVSINMEIVIEKGRGYVPAEENKKPGAAIGTIPIDSIFTPIKNV
KYSIENYRVEQKTDYEKLVFEISSDGSINPKDALTEAAKVLIHHFMLFSDERITLEADEI
AQTETYDEESLHMRQLLKTKLVDMDLSVRALNCLKAAEVDTLGDLVSFNKNDLMKFRNFG
KKSLTELEELVINKGLSFGMDLSKYKLDKD
NT seq
993 nt
NT seq
+upstream
nt +downstream
nt
atggcattattaaattttcagaagcccgataaagttataatgatcgattctacagatttt
gaagggaaatttgaatttcgtcctttagagcctggttatggattgactgttggaaacgca
ttaagaagagtattactttctgcattagaaggttttgcaattacttctgtgagaatggac
aaagtagaacatgagttctctgttattcctggtgttgttgaagacgttacagaaatgatt
ttaaacttaaaacaagttcgttttaagagacaaatagaagatgttgaagctgaaacagtt
tcaatttctgtaagtggtaaaaatcagttaactgcgggtgattttcagaaatttatttct
gggtaccaagtattaaatcctgatttagtaatttgtaatatggatgctaaagtaagcatc
aatatggaaattgttattgaaaaaggaagaggatacgtaccagcagaagagaataaaaag
cctggtgctgctataggaactattccaattgattctatttttacgcctattaaaaacgta
aaatatagtattgagaactatcgtgtagaacaaaaaactgattatgaaaaactagttttt
gaaatcagtagcgatggatcaataaatcctaaagatgctttaactgaagctgcaaaggtt
ttaattcatcacttcatgttattctctgatgagcgtattactctagaagcagatgaaata
gctcagactgagacttatgatgaggaatcattacacatgcgtcagttgctaaaaactaaa
ttagtagatatggatttatcagttcgtgcactaaattgtttaaaagcagcagaagtagat
acattaggagacttagtttcatttaacaaaaatgatcttatgaagtttagaaacttcggt
aaaaaatcattaactgaattagaagagttagtgattaataaaggattaagttttggaatg
gacttgtcaaaatataaattggataaagattaa
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