Cellulophaga lytica HI1: IX49_11545
Help
Entry
IX49_11545 CDS
T03279
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
clh
Cellulophaga lytica HI1
Pathway
clh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
clh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IX49_11545
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
clh03021
]
IX49_11545
03019 Messenger RNA biogenesis [BR:
clh03019
]
IX49_11545
Transcription machinery [BR:
clh03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
IX49_11545
Messenger RNA biogenesis [BR:
clh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
IX49_11545
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_25
OB_RNB
AAA_22
GGN
Ndc1_Nup
Motif
Other DBs
NCBI-ProteinID:
AIM61124
LinkDB
All DBs
Position
complement(2544378..2546036)
Genome browser
AA seq
552 aa
AA seq
DB search
MFEISDLKAKKLPELQDIAKGLNVPKFKTLKKLDLVYQILDVQAANPKAVEEVVVKEPKP
TKAPASAKAKPAEKPKPRPVKRERVLREKPKPKAKEETTTEETKEPVAKKAPAPKKAPVA
KNTKPSAATEKKPVHRNNQGQQKNNGQHKNQNKKPQHQKNSRDKSNFDKDLKNRYREPEF
EFDSIIASEGVLDIMQDGYGFLRSSDYNYLSSPDDIYVSQSQIRLFGLKTGDTVLGNVRP
PKEGEKYFPLIKVNKINGIDPQVVRDRVSFEHLTPLFPQEKFNLAEKQSNISNRIIDLFS
PIGKGQRGMIVAQPKTGKTMLLKDIANGIAANHPEVYQIVLLIDERPEEVTDMQRNVQGE
VIASTFDKEPSEHVRVANIVLEKAKRLVECGHDVVILLDSITRLARAYNTVQPASGKVLS
GGVDANALNKPKRFFGAARNIENGGSLSIIATALTETGSKMDEVIFEEFKGTGNMELQLD
RKISNRRIFPAIDLTSSSTRRDDLLLDENTIQRMWILRKYLADMNPVEAMEFIEQRIKQT
KNNEEFLLTMNQ
NT seq
1659 nt
NT seq
+upstream
nt +downstream
nt
atgtttgagatttccgatttaaaagcaaaaaagcttcctgaattacaggatattgcaaaa
ggtttaaatgttcctaagtttaaaacattaaaaaaactagatttggtataccaaatacta
gatgtacaagcagcaaaccctaaagcggtagaagaagttgttgttaaagaacctaaacca
accaaagcgccagcttctgcaaaagcaaaacctgcagaaaagcctaaaccacgaccggta
aaaagagagcgtgttttaagagaaaagccaaaacctaaggcaaaagaagaaacaactaca
gaagaaacaaaagagcctgttgcaaaaaaagcaccagctcctaaaaaagctcctgtagct
aaaaacacaaaaccttctgctgctactgaaaaaaaaccagtacacagaaacaaccaaggc
cagcaaaaaaataatggtcagcataaaaatcaaaacaaaaaaccacagcaccaaaaaaat
tctagagacaaaagtaattttgacaaggatttaaaaaatagatacagagagccagagttt
gagtttgatagtattattgctagtgaaggtgttttagatattatgcaagacggttatggt
tttttaagatcgtctgattacaactacctttcttctcctgatgatatttatgtttcacaa
tctcaaattagattatttggattaaaaacaggagatacggttttaggaaatgtgcgccca
cccaaggaaggcgaaaagtactttccgctaattaaagtaaataaaattaatggtatagat
ccacaggttgtacgtgaccgtgtttcttttgaacacttaacaccattatttcctcaagaa
aaatttaaccttgctgaaaagcagagtaatatttccaacagaattatagatttgttttca
ccaattggtaaaggacaacgtggtatgatcgttgcccagccaaaaactggtaaaacaatg
cttttaaaagacattgctaacggtattgcggcaaaccatccagaggtttatcaaattgta
ttactaatagatgaacgtccggaagaagttacagatatgcaacgtaatgttcaaggagaa
gtaattgcctctacttttgacaaggaaccatctgaacacgtacgtgtggctaatattgta
ctagaaaaagccaagagattggtagaatgtggccacgatgtggttattttattagattct
attacacgtttagcaagagcatataacacggtacaaccagcgtctggtaaagtattaagt
ggtggtgtagatgcaaacgcattaaacaaaccaaaacgtttctttggagctgctcgtaat
atagaaaacggaggttctttatctattatagctactgcacttacagaaactggctctaaa
atggacgaagttatctttgaagaatttaaaggaactggtaatatggagcttcagttagac
cgtaaaatatctaacagaagaatattccctgcaattgaccttacttcttcaagcacacgt
agagatgatcttttactagatgaaaacacaattcaacgtatgtggattttacgtaaatac
cttgcagatatgaaccctgtagaagctatggagtttatagaacaacgcattaaacaaact
aaaaacaatgaagagtttttattgacaatgaatcaataa
DBGET
integrated database retrieval system
