Cellulophaga lytica HI1: IX49_11885
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Entry
IX49_11885 CDS
T03279
Name
(GenBank) hypothetical protein
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
clh
Cellulophaga lytica HI1
Pathway
clh03420
Nucleotide excision repair
clh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
clh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
IX49_11885
03430 Mismatch repair
IX49_11885
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
clh03400
]
IX49_11885
Enzymes [BR:
clh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
IX49_11885
DNA repair and recombination proteins [BR:
clh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
IX49_11885
MMR (mismatch excision repair)
Other MMR factors
IX49_11885
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
AAA_19
ATPase_2
Viral_helicase1
ResIII
AAA_22
AAA_11
AAA_16
AAA_7
UvrD_C_2
NPHP3_N
RNA_helicase
DEAD
Methyltransf_16
Methyltransf_31
Mg_chelatase
Motif
Other DBs
NCBI-ProteinID:
AIM61191
LinkDB
All DBs
Position
complement(2626173..2628602)
Genome browser
AA seq
809 aa
AA seq
DB search
MYNNYLDWLENQRSILDELFARAGFTFYEKHKHLDNFSFDANETQKECYLLGTDRDLCYD
RFTIGLSYSLWYQGKRTNAFISYFAKLLYEAREENEITLLDLGAGTGAVQLAISLCKIGL
DQLFGKSPKITIINIDTSPFMLDYNRSYLWPEFIKSYEIAKDIKTIYSVNSWEQTDTSNF
NNFWITASYLFDQSDNVQHLSDNLSKLVETFEPRFIICNTSKRKSYLMNKASVPIKNQNY
EVLSIDMKHLFTGSLPSTLAVRRKIKEECGVQYNGMPVWRENWMSSIILRLATPGLSIPI
ESPSVDLFTPPLTVRRDIILSPEQKKAAEDDGRPTVIYGPAGCGKTVVITERIINILKNS
SEKPIEEISILVTTFNKGLVSVIKSWLKELLSREKFKFIDRGDSLRVGESTKDTITIMHF
DVLPTRLWSKISDAPTPFKNDKIQFDNYHLSVAARAINTIKKKYGITTNVYDHVLNDRYV
IDEYHYVIYGQDIAEASIYAKARIKGRKRLERDGNSRKYLFESVVLYLELLGLNSSFVKR
RHQFYKELKKSNKSFGFSHLIVDEFQDCTQTDYNIFYELLKNPNNLIICGDFAQAIHLGN
VANIPRLSQEDMGRRKFIQLVGSYRLPYRISECLQNFSKNIVTEEDDIKNPLSPFKGAPP
GARPILIKASNSKEMALKIKNAVSSYHQYDIFNFNVVPYDNILILEKDAELRNELALFRR
GLSYDETILKVKGLEKKCVVWTARKNIEFSERIRHYVYTILTRTSGILIIALFGEECKEY
KDIINEFDPERVIIWDQDTKNYLDENYKL
NT seq
2430 nt
NT seq
+upstream
nt +downstream
nt
atgtataataattatttagattggctagagaatcagcgcagtattttagatgaattattt
gctagagcaggttttactttttacgaaaaacacaaacatttagacaatttttcctttgat
gcaaacgaaactcaaaaagaatgttatttgcttggtacagatagagacttatgctatgat
cgttttactataggattatcttattctctttggtatcaaggaaaaagaacaaatgcattt
ataagttacttcgccaagttactttacgaagcacgtgaagagaatgaaattactctactt
gacctaggtgctggaaccggagctgttcaacttgctatttctttatgtaaaataggtctt
gaccagttatttggtaaaagccccaaaattaccattataaatattgacacaagtcccttt
atgttggattacaataggagttatttgtggcctgaatttattaagagttacgaaatagcg
aaggatataaagacaatttattccgtcaattcttgggaacagacagatacttctaatttc
aataatttttggataacagccagctatttatttgatcagagtgataatgttcagcattta
agtgataatttatccaaactggtagaaacctttgaacctagatttattatttgcaatact
tctaaaaggaaaagctatttgatgaataaagcttctgttcctatcaaaaatcaaaattac
gaagtgttgtctattgatatgaaacatctatttactggttctttaccaagtactttagct
gtaagacgcaaaataaaagaagaatgcggagtacagtataacggtatgccagtatggcga
gaaaactggatgtcatcaataattttgagacttgcgaccccaggtttatcaattcctata
gaatcaccttctgtagatttgtttacaccaccgttaaccgttcgtagggatataattctg
tctccagaacaaaagaaagcagctgaagatgacggaaggcctactgtaatatatggacca
gctggatgtggtaaaactgtagtgattacagagagaataataaatatcttaaaaaatagc
tctgaaaaaccaattgaagagatatctatactcgtaacaactttcaataaaggacttgta
agtgttataaaaagttggttgaaggagttgttatcacgtgagaaatttaagtttattgat
cgtggcgattctttgcgagtaggcgaatcaactaaagataccattaccataatgcatttt
gatgttttgcctactaggttatggtctaaaatttcagatgcaccaactccgtttaaaaat
gataaaattcagtttgacaattatcacttaagtgttgctgccagggcaataaatacaatt
aaaaagaaatatggaattactactaatgtttacgatcacgtacttaatgacagatacgtt
attgatgaatatcactatgtgatttatggacaagatatagcagaagcatcaatatatgct
aaagcacgaattaaaggtagaaagcgcttagaaagagatggtaattcaagaaaatactta
tttgaaagtgtcgtactgtatcttgaacttttaggtttaaatagttcttttgtaaagaga
cgccatcagttttataaagaattgaaaaaatcgaacaaaagttttggattttctcatctt
attgttgatgagtttcaagattgtactcaaactgattataacatcttttatgagttacta
aaaaacccaaataatcttatcatttgtggagattttgcacaagccatacatcttggaaat
gttgcaaatattccaagactgtcgcaagaggatatgggtagaagaaaatttattcaacta
gtaggatcttatagactgccttacagaataagtgaatgtctacagaatttttctaaaaat
atcgttactgaagaagatgatattaaaaatcctttatctccatttaaaggtgctccgcca
ggtgctcgaccaatccttattaaagcttcaaattcaaaagagatggcattaaagattaaa
aatgcagtgtcttcctatcatcaatatgatatatttaattttaacgtagtcccttacgac
aatatcctaattcttgaaaaagacgcagaactaaggaatgaacttgctttatttaggcgc
gggctttcctatgatgagaccatattaaaagttaaaggattggaaaagaagtgtgtggta
tggacagcgcgaaagaatatagaatttagcgaacgtattaggcattatgtctacactatt
ttaacgcgaacatctggaattttgattatcgcactatttggggaagaatgtaaagagtac
aaagatattataaatgaatttgatccagagagagtgattatttgggatcaagacacaaaa
aactatttggatgaaaactacaagctttaa
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integrated database retrieval system
