Cellulophaga lytica HI1: IX49_14005
Help
Entry
IX49_14005 CDS
T03279
Name
(GenBank) excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
clh
Cellulophaga lytica HI1
Pathway
clh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
clh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
IX49_14005
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
clh03400
]
IX49_14005
DNA repair and recombination proteins [BR:
clh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
IX49_14005
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
IX49_14005
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_inter
UvrA_DNA-bind
ABC_tran
SMC_N
AAA_29
AAA_16
nSTAND1
RsgA_GTPase
AAA_21
nSTAND3
DnaJ_CXXCXGXG
MeaB
cobW
Viral_helicase1
AAA_25
PRK
AAA_15
AAA_23
Motif
Other DBs
NCBI-ProteinID:
AIM61587
LinkDB
All DBs
Position
complement(3161086..3163914)
Genome browser
AA seq
942 aa
AA seq
DB search
MITYEENIEVKGARVHNLKNIDVTIPREKLVVITGLSGSGKSSLAFDTIYAEGQRRYIET
FSAYARQFLGGLERPDVDKIDGLSPVIAIEQKTTSKSPRSTVGTITEIYDFLRLLFARAA
DAHSYNTGEKMVSYSDTQIKELIINDFKDKKINVLAPVIKSRKGHYRELFEQIAKQGFVK
VRVDGEIVDIVKGLKLDRYKVHDIEIVIDRLKISDNADLDKRITETINTAMYSGDNVLMI
LEEGKKEPRYFSRDLMCPTTGISYPKPEPNTFSFNSPKGMCPSCNGLGHKYQVNTSKIFP
DTKLSIKDGGIAPLGKFKNSWAFKQLDVIAQRYNFKLTDPISKIPEEAIEVILNGGNESF
EVDSKTLGIKRNYKIEYEGISNFIESQYNEANSAPIKRWAKEFMDKVVCPTCEGSRLQKA
SLYFKFDDKNIADLATMDIVDLAEFFSKVDKKLTKNQLKIAEEVIKEIKTRLQFLLNVGL
DYLSLNRSSKSLSGGEAQRIRLATQIGSQLVGVLYILDEPSIGLHQRDNERLIASLEALR
DIGNSVIVVEHDKDMIERADHVIDIGPKAGKHGGQIISEGKPEDLKNYNTLTADYITGKR
EISIPKKRRKGNGKKIKLTGCTGNNLKNVSVEFPLGQMIGVTGVSGSGKSTLINETLYPI
LNAYYFNGVKKPMPYKKITGLEHIDKVIDINQSPIGRTPRSNPATYTGVFGEIRALFAKT
QEAAIRGYKPGRFSFNVTGGRCETCQGGGLRVIEMNFLPDVYVDCETCNGKRFNRETLEI
RYKGKSIADVLEMTINEAVTFFENIPKINRKLKTIQDVGLGYISLGQQSTTLSGGEAQRI
KLATELSKRDTGNTFYILDEPTTGLHFEDIRVLMEVLNKLVDKGNTVLVIEHNMDVIKMV
DYIIDIGYEGGRGGGKLVAKGTPEEIIKDKKSYTAKFLKKEL
NT seq
2829 nt
NT seq
+upstream
nt +downstream
nt
atgattacatacgaagaaaacatagaggtaaaaggtgcacgtgtgcacaaccttaaaaat
atagacgttaccatacctagagaaaagcttgttgttattacaggcctgtctggtagtggt
aagtcttcattagcttttgacactatttatgcagaaggccaacgtaggtatatagaaact
ttttctgcctatgctcgtcagtttttaggaggtttagagcgtccagatgtggataaaata
gatggattatcgcccgtaattgccatagagcaaaagacaacgtcaaagtctccacgatct
acagtaggtacaattaccgaaatatatgactttttaagactcctttttgctcgtgcagca
gatgcacatagttacaacacaggagaaaaaatggttagttatagtgatactcaaataaaa
gagcttattataaacgattttaaagacaaaaaaataaacgttcttgctcctgttattaaa
tctagaaaaggtcattaccgtgagttgtttgagcaaattgctaaacaaggatttgtaaaa
gtaagagtagacggcgaaattgtagacattgttaaaggtttaaaattagaccgttacaaa
gtacatgatatagagattgttatagacaggttaaaaatatcagacaacgcagacctagat
aaacgtattacagaaaccataaatacagcaatgtatagtggtgataatgtattaatgatt
ttggaagaaggtaaaaaagaacctcgctattttagtagagatttaatgtgccctaccaca
ggtatatcttacccaaaaccagaaccaaatacattttcttttaactcaccaaagggtatg
tgccctagctgtaatggcttgggtcataaataccaagttaatacatctaaaatttttcca
gatactaagttatctattaaggatggtggtattgctccattaggtaagtttaaaaattct
tgggcttttaaacaattagatgttattgctcagcgttacaattttaaattaacagatcct
atttctaaaataccagaagaggctatagaagttattttaaatggtggtaatgaaagtttt
gaggtagattctaaaacactaggcataaaacgaaactataaaattgaatacgagggtatt
tctaattttattgaaagccaatataacgaggctaactctgctcctattaaacgttgggct
aaagagtttatggacaaagttgtttgccctacttgtgaaggctctagactgcaaaaagca
tctttatattttaaatttgatgataaaaatattgcagatttagcaacaatggatattgtt
gacttggcagagttttttagtaaggttgataaaaagctcactaaaaatcaacttaaaatt
gctgaagaagtcattaaagaaataaaaactaggctacaatttttattaaatgttggttta
gactatttatcattaaacagaagctctaaatctttatctggtggtgaggcacaacgtata
cgtttagccacacaaataggatctcaactagtaggtgttttatatattttagatgaacca
agtattgggttacaccaaagagacaacgagcgtttaatagcatctttagaggctttaaga
gatataggaaactctgttattgtagtagaacatgacaaagatatgatagagcgtgcagac
cacgttatagatattggaccaaaagcgggcaagcacggcggacaaataatttctgaaggt
aaacctgaagatttaaaaaattacaatacacttactgctgattatattacaggtaagaga
gaaatttccattcctaaaaaacgaagaaaaggaaatggtaaaaaaataaaacttacgggt
tgtacaggtaacaatttaaaaaatgtttcggtagaatttcctctaggtcaaatgattgga
gtaacaggagtttcaggcagtggaaaatctaccttaattaatgaaaccctctaccctatt
ttaaatgcttactattttaacggtgttaaaaaaccaatgccgtataaaaaaattacaggc
ttagagcatatagataaagtaatagatattaaccaatcaccaattggcagaactccacgt
tctaacccagcaacatatacaggtgtttttggagaaatacgagccttatttgctaaaaca
caagaagcagcaattagaggctacaaaccaggtcgttttagttttaatgttactggcgga
aggtgtgagacttgtcaaggtggaggtctacgcgttatagaaatgaactttttaccagat
gtttacgtagattgtgaaacctgtaatggcaaacgttttaatagagaaaccttagaaatt
agatacaaagggaaatctattgcagatgtattagaaatgacaattaatgaagccgttact
ttttttgaaaatatcccaaaaattaatcgcaaattaaaaaccatacaagatgtaggttta
ggatacatttctcttggccaacaatctactacattatctggtggtgaagcacaacgtatt
aagttagctacagaattatctaaaagagatacaggtaatactttttatattttagatgag
cctacaacaggattgcattttgaagatattcgtgtactaatggaagttttaaacaaatta
gtagacaaaggaaatacagttttagttattgaacacaatatggatgtaattaaaatggta
gattatattatagatattggttatgaaggtggccgtggcggaggaaaattggtagcaaaa
ggaacaccagaagaaattattaaggataaaaaaagttacactgcaaagtttcttaaaaaa
gaattataa
DBGET
integrated database retrieval system
