Cellulophaga lytica HI1: IX49_17015
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Entry
IX49_17015 CDS
T03279
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
clh
Cellulophaga lytica HI1
Pathway
clh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
clh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IX49_17015
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clh03019
]
IX49_17015
Enzymes [BR:
clh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
IX49_17015
Messenger RNA biogenesis [BR:
clh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
IX49_17015
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
UvrD-helicase
AAA_19
Shikimate_DH
P-loop_SecA
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AIM62142
LinkDB
All DBs
Position
complement(3804613..3805902)
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AA seq
429 aa
AA seq
DB search
MTFKNLGLSNNLLKAIDKKGYTTPSPIQEKAIPPVLEGKDVLASAQTGTGKTAGFTLPLL
HLLSEQKALRHRPVRALILTPTRELAAQIFANVKEYSEFLDLRSAVIFGGVNQKPQIANL
KRGMDVLVATPGRLLDLHNQRFLSLDKVEIFVLDEADRMLDMGFLRDIERVMKLIPAKRQ
NLMFSATFSKDIKKLAHGILNNPIQVEATPENTAVEVIKQKVYRVAKGKKTGLIIKLISD
GNWQQVLVFTRTKHGANNLCKKMSSKGISAAAIHGNKSQGARTKALDGFKKGTLRVLVAT
DIAARGLDIPLLPHVINYEIPNISEDYVHRIGRTGRAGASGEAVSLVSADETTYLKDIQK
LIGMQIPVEIVEGFEPDPNASTKPIKQGQRNNRSRSSSSKPKGGASKNNTSNNRRPKRNN
DRRSNNKRN
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
atgacatttaaaaacttaggtttatctaataatctattaaaagcaatagacaaaaagggg
tatacaactccgtctccaatacaagaaaaagcaataccgcctgttttagaaggtaaagat
gttttggcatctgcacaaacaggcacaggtaaaacagcaggttttactttaccattatta
catttattatcagaacaaaaagcgttaagacataggccagtacgcgctttaatattaacg
ccaacaagagaattagcagcgcaaatatttgctaacgtaaaagaatatagcgagttttta
gatttacgctccgcggtaatttttggtggagtaaaccaaaaaccacaaatagcaaattta
aaaagaggaatggatgttttggtggcaacacctgggcgtttactagatcttcataaccaa
cgatttttatcattagataaagtagaaatttttgtgttggatgaagcagaccgtatgtta
gatatgggttttttgcgtgatatagaacgcgtaatgaagttaataccagcaaaaagacaa
aatttaatgttttcagcaactttttctaaagacattaaaaagctagctcacggtatttta
aataaccctatacaggttgaagctacaccagaaaatacagctgtagaggtaattaagcaa
aaagtttacagagtagccaaaggtaaaaaaacgggcttaattattaagttaatatcagac
ggcaattggcaacaagtattagtgtttacaagaacaaaacacggagcaaataacttgtgt
aaaaaaatgagctcaaaaggtatttctgcagcggctatacacggtaacaaaagtcagggt
gcacgtacaaaagcattagacggatttaaaaaaggaacactacgtgtgttagtagctaca
gatattgctgcacgtggtttagatattcctttactaccacacgtaattaattatgaaatt
ccaaatatatctgaggactatgtacaccgtataggtagaacaggtagggcaggtgcaagt
ggtgaggcagtatctttagttagtgcagatgaaaccacatatttaaaagatattcaaaaa
ttaataggaatgcaaattcctgtagaaattgtagaaggttttgagccagatcctaatgca
tctacaaaaccaattaaacaaggacaacgtaataatcgttctagaagttctagcagcaag
cctaaaggcggagcatctaaaaacaatactagcaataaccgtagacctaaacgtaataat
gaccgcaggtctaacaataaacgcaattaa
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