Chlorobium limicola: Clim_0018
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Entry
Clim_0018 CDS
T00766
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08301
ribonuclease G [EC:3.1.26.-]
Organism
cli
Chlorobium limicola
Brite
KEGG Orthology (KO) [BR:
cli00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cli03019
]
Clim_0018
03009 Ribosome biogenesis [BR:
cli03009
]
Clim_0018
Messenger RNA biogenesis [BR:
cli03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Clim_0018
Ribosome biogenesis [BR:
cli03009
]
Prokaryotic type
rRNA processing factors
Clim_0018
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
S1
RNase_E_G_Thio
S1_RRP4
DUF8260
Motif
Other DBs
NCBI-ProteinID:
ACD89126
UniProt:
B3EDP6
LinkDB
All DBs
Position
21239..22939
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AA seq
566 aa
AA seq
DB search
MKKSMNKQLLMNKIGDEIQVALVEEGRLAELTIERPESRRSIGDIYLGRVHKVVEGLKAA
FVDIGQKSDGFLHFSDVGTTNEDYRALIEDDDDDESVSSDDGDGDAVEVAATAGGGDPPA
AGPHARGPQRNGGRKGPVTEEEKAEKRQSYTQMIAGKLKPNDSILVQVIKEPISSKGSRL
TSDITIAGRFMVLLPFGGGQVAVSRRVVVRKERARLKKLVRSMLPEGFGAIIRTVAEQQE
ESLLKQDLEKLLTKWVQIEEKLKDASPPQLIFKEDTIISSVLRDSLTSDVTEIVANSPVI
YKETLNYIQWAAPEMEKNVSLYQGKLPLFEGYSIAKDVESIFSRKVWLKSGGYIIIEHTE
AMVVVDVNSGRYAAKREQEENSLKTNLEAAREIVRQLRLRDIGGIIVVDFIDMLDPKNAK
KVHDAMKTELRNDRAKSNILPMSDFGIMQITRERIRPSLMQRMGDQCPACGGTGVVQARF
TTINQIERWLRKYALQQSMKFQQLDLYVSPTVAEPLRNTEMKTELKWFLQHMVFVRVKQD
ESLRSDDFRFYNRKNNKDITAEYGEL
NT seq
1701 nt
NT seq
+upstream
nt +downstream
nt
atgaagaagagtatgaacaaacaactcctcatgaacaagatcggcgacgagattcaggtc
gcgcttgttgaagagggtcggcttgcggagctgaccatcgagcggccggaaagccgccgc
agtatcggcgatatctatcttggcagggtacacaaggttgttgagggtctgaaggccgca
tttgtcgatatagggcagaaatcggacggttttttgcatttctcggatgtaggcaccacc
aacgaagattatcgcgcgctcattgaagatgacgatgacgatgaaagcgtcagcagcgat
gatggagatggggatgcggttgaagtcgcggcaactgccggcggcggcgatcctcctgcc
gcagggccgcatgcaagagggccgcagcgcaacggcggcagaaaaggaccggttaccgaa
gaggaaaaggcggaaaagcggcaatcctatacgcagatgatagccggcaagcttaaacca
aacgactctattctcgttcaggttatcaaggagccgatcagcagcaaaggatcccgcctg
acatccgacatcaccatcgcagggaggttcatggtgctgcttcctttcggaggtggacag
gttgccgtttcacgcagggtggttgtgcgcaaggaacgggcccgtttgaaaaaacttgtg
cgatccatgctcccggaaggtttcggagccattatccgcaccgtggccgagcagcaggaa
gagtctctgctcaagcaggatcttgagaagcttcttacaaaatgggtgcagatcgaagaa
aaactcaaggacgcctctccgcctcagctgattttcaaggaggataccattatctccagc
gtattgcgcgactcactcacctccgacgtaacggaaatagttgccaactcaccggtaatc
tacaaggagaccctcaactatatccagtgggcggctccggaaatggagaagaacgtttct
ctttaccagggaaagcttcctctttttgaaggatacagcatagccaaggatgtcgaatcc
atcttttcgcgcaaagtgtggctgaaatcgggcggatatatcatcatcgagcacaccgaa
gccatggtggtggttgacgtcaacagcggacgctatgcggccaagcgcgaacaggaggaa
aactctctcaaaaccaatcttgaagctgcacgcgagattgtccgtcagctcaggctgcgc
gacataggcggcattatcgtggtggactttatcgatatgctcgatccgaaaaatgccaaa
aaagtgcatgacgccatgaagaccgagctgcgcaacgaccgggcgaaatcgaatatcctg
ccaatgtccgatttcggcatcatgcagatcacccgtgagcgtatccgaccgagtctgatg
cagcgcatgggcgaccagtgtcccgcctgcggaggcaccggtgtggtgcaggctcgtttt
actaccatcaaccagatagagaggtggcttcgcaaatatgcgctgcagcagagcatgaag
tttcagcagctcgatctctatgtcagtcctaccgtagccgaaccgctcaggaataccgag
atgaaaaccgagctgaaatggtttcttcagcatatggtctttgttcgcgtcaagcaggac
gaaagccttcgcagcgacgatttcaggttttacaaccgcaaaaacaataaagacataacc
gccgaatacggcgaactctaa
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