Chlorobium limicola: Clim_0544
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Entry
Clim_0544 CDS
T00766
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
cli
Chlorobium limicola
Pathway
cli03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cli00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Clim_0544
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cli03019
]
Clim_0544
Enzymes [BR:
cli01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Clim_0544
Messenger RNA biogenesis [BR:
cli03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Clim_0544
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SNF2-rel_dom
AAA_19
AAA_22
Cas3-like_C_2
ERCC3_RAD25_C
CheB_methylest
Motif
Other DBs
NCBI-ProteinID:
ACD89636
UniProt:
B3EGJ9
LinkDB
All DBs
Position
complement(613647..614903)
Genome browser
AA seq
418 aa
AA seq
DB search
MQFRSLAIIEPILQAIEEEGYQTPTPIQAEAIPLILDGNDLLGCAQTGTGKTAAFAIPVL
QLLNAVKTNEKKRKIRSLIITPTRELAIQIGESFKAYGRHTGLTSTVIFGGVNQNPQTAS
LQKGIDILIATPGRLLDLMNQGHLHLRNIEFFVLDEADRMLDMGFIHDIRKILAELPKKK
QSLFFSATMPPEITRLAASILHNPVEVSVTPVSSTVEIINQQIFFVDKGNKNNLLVHLLK
NQDIKTALVFTRTKHGADKVVKYLLKHDITAAAIHGNKAQNARQRALTNFKEQTMRVLVA
TDIAARGIDVDELEYVINFDMSNIAETYVHRIGRTGRAGAKGTAISFCDAEEKEYLRDVE
KLIAKKIPVVESHPFPLIDHNPVKTPKQQGRGNSGHPGPKPPAKSASKRWSSNPRKAR
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgcaattcagatcattagccataatcgaaccgattttacaagcgatagaagaagaaggc
taccagacaccgactcccattcaggcagaagcaataccgctgattctcgacggcaacgac
cttctcggctgtgcacagaccggaacgggaaaaactgccgcattcgcaattcccgttctg
cagctgctcaacgcagtaaaaaccaatgagaaaaaaagaaagatccgaagcctgatcatt
accccgaccagagagctggccattcagatcggagaaagcttcaaggcatacggacgacat
accgggctcaccagtacggtaatttttggcggagtcaaccagaacccgcaaacagcctct
ctgcaaaaaggaatcgatatcctgattgcaacacctggccgtctgcttgacctgatgaac
cagggccatctgcatctgcgcaatattgagtttttcgttctggatgaagcggaccgcatg
cttgacatgggttttattcacgacataagaaaaatccttgccgaactgcctaaaaagaag
caatcgctcttcttttcagcaaccatgcctcccgaaatcaccaggcttgccgcatcgatt
ctgcacaatcccgtagaggtctcggtaacaccggtctcttcgactgtcgagatcatcaat
caacagatattcttcgtcgataaaggcaataaaaacaacctgctggtccatttgctgaaa
aatcaggacatcaaaacagcactcgtatttacccgtaccaagcacggagccgacaaggtg
gtaaaataccttctgaaacacgatatcacagcagcggccatccatggcaacaaggctcag
aatgcacgacagcgcgccctgacgaacttcaaggaacaaaccatgagggttcttgtggca
accgatattgccgcaaggggcatcgatgtggacgaactggaatatgtgatcaatttcgac
atgtcgaatattgccgaaacctatgtccatcgtataggacgcaccggaagggccggcgcg
aagggtaccgcgatttcattctgtgacgccgaggaaaaagagtacctccgcgacgtggaa
aaactgatcgccaagaaaattccggttgtggaatcgcatccgttccccctgatcgatcac
aatccggttaaaacccccaaacagcagggacggggaaactcgggccatcccggcccgaaa
ccaccggcaaagagcgcttcgaaacgatggtcgagtaatccgagaaaggcaaggtag
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