Chlorobium limicola: Clim_0558
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Entry
Clim_0558 CDS
T00766
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
cli
Chlorobium limicola
Pathway
cli03410
Base excision repair
cli03430
Mismatch repair
cli03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cli00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Clim_0558
03430 Mismatch repair
Clim_0558
03440 Homologous recombination
Clim_0558
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cli03400
]
Clim_0558
DNA repair and recombination proteins [BR:
cli03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
Clim_0558
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Clim_0558
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Clim_0558
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
ACD89650
UniProt:
B3EGL3
LinkDB
All DBs
Position
630881..632596
Genome browser
AA seq
571 aa
AA seq
DB search
MKRYSWVRLEPQEKQVSLLAGAINVSHPLARALCNRGITTFEEAKTFFRPSISQLSSPFL
LQNMERAAERVIAALNNHEKILLYGDYDVDGTTGTALLCLFLRDQGAEVFYYINDRFTEG
YGLSSEGIAYAEKSGVSLIITIDCGIRAGEAIERCAQAGIDVIVCDHHEPDELPPAFAIL
NPKVPECTYPFRELCGCAVAFRLVQAVAERLGAGEESWKQYLDLVAIATAADMVSLEKEN
RILVNEGLKRIRISPRKSLSGMLSVMGIDAGTMTMYHIAFGLAPRINAAGRMHSAHLAVE
WLLAATETGALETAQALDRMNLERREIDTAIFSRADRMIEGHFASYCSSIVLYDEEWHLG
VLGIVASRMLEKYYLPTVIMGSMNGMIKGSVRSVEGINIYEVLQECSDHLVQFGGHNQAA
GITLRPEDLAGFRKKFDNICAALLPADKRQKELVIDSSLQLEEITANFMNVLDQFAPYGF
GNREPVFETSAVVLVGRPRLLKEKHVKFSVRDGNGRLFDVIGFDRKDVFQILDADPGIRF
SMAYSLEKRSWNNREQWQLRLKDLDAGKSVS
NT seq
1716 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgctacagctgggtacggcttgaaccacaggaaaagcaggtttctcttctggct
ggcgcgatcaatgtcagccatcctcttgcacgggcattatgcaatcgggggataaccacg
tttgaagaggccaaaacattttttcgcccttcaatcagccagctctcatctccctttctg
ctgcagaatatggagcgtgcggcagaacgggttattgccgccttgaacaaccatgaaaaa
attctgctttacggcgactatgacgtggatggaacaaccggcacggcgctgctctgtttg
tttctcagggatcagggggcggaagttttctactatataaacgaccgctttaccgaagga
tacggtctttcgtcagagggcatagcgtatgccgaaaaatccggggtatcgcttatcatt
acgattgattgcggcattcgggccggagaggcaattgaacggtgcgcacaggccggtatc
gatgtaattgtgtgcgatcaccatgaaccggatgaactgccgcccgcctttgccattctc
aaccccaaggtgccggagtgtacctatccattccgggagctctgcggctgtgccgttgcc
tttcgtctcgttcaggccgttgcggaacgacttggcgccggcgaagagagctggaagcaa
tatctcgatcttgttgccatagcaacagccgccgatatggtgtcgctggaaaaggagaac
cgcatccttgtcaatgaggggctgaagcggatcaggatatctccgcgaaaaagcctttcc
ggcatgctttctgtcatgggaatcgatgccggtacgatgaccatgtatcatattgctttc
ggtcttgcgccgaggatcaatgccgcaggacggatgcattcggcacatcttgccgttgaa
tggctgcttgccgcaacggaaacaggagctcttgaaacagcgcaggcgctcgaccggatg
aatctggagcgccgtgagatcgacaccgctattttttcaagggctgacagaatgatcgag
gggcatttcgcttcatactgttcttcaattgtgctctacgatgaggagtggcatcttggc
gtgctcggcatcgtcgcttccagaatgcttgaaaagtattatctgccgaccgtaatcatg
ggcagcatgaacggcatgatcaaaggctcggtgaggagtgtcgaggggatcaatatttat
gaggttctccaggagtgcagcgatcatctcgttcagtttggcggccataaccaggcagcc
ggcataacgctcaggccggaagatctggccggtttcagaaagaagttcgacaacatatgc
gcagctctgcttcccgcggataaacggcagaaagagctcgtcatcgattcgtcgctgcag
ctcgaggagattactgccaatttcatgaatgtgctcgatcagtttgctccatacgggttt
ggaaaccgcgaaccggttttcgagacttctgcagtagtgcttgtcgggcgtccgcgactg
cttaaggaaaagcatgtgaaattttcggttcgcgacggaaacggacgtcttttcgatgtg
atcgggtttgaccggaaggatgtttttcagattctcgacgccgatccgggcatacggttc
tcgatggcctattcgctcgagaaaaggagctggaataaccgcgaacagtggcagctccgg
ctcaaggaccttgatgccgggaaatccgtatcctga
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