Chlorobium limicola: Clim_0599
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Entry
Clim_0599 CDS
T00766
Name
(GenBank) Polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
cli
Chlorobium limicola
Pathway
cli03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cli00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Clim_0599
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cli03019
]
Clim_0599
03016 Transfer RNA biogenesis [BR:
cli03016
]
Clim_0599
Enzymes [BR:
cli01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
Clim_0599
Messenger RNA biogenesis [BR:
cli03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Clim_0599
Transfer RNA biogenesis [BR:
cli03016
]
Prokaryotic type
tRNA degradation factors
Clim_0599
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
KH_1
S1
PNPase
KH-I_KHDC4-BBP
RNase_II_C_S1
KH_2
KH_KhpA-B
KH_PNO1_2nd
KH_NusA_2nd
OB_RRP5_4th
KH_NusA_1st
Motif
Other DBs
NCBI-ProteinID:
ACD89686
UniProt:
B3EH06
LinkDB
All DBs
Position
complement(670217..672427)
Genome browser
AA seq
736 aa
AA seq
DB search
MISMIINKAIDLGQGKIISIETGKMAKQADGSVVVRLGDTMVLATVVSSKKTPPPNQDYF
PLQVEYREKYSAAGKFPGGFFKRESRPSEKEILSARLIDRALRPLFPDGYLFETQIIVTV
ISSDQINDADVLGGLAASAAIMVSDIPFHNAMSEVRVGRINGKFIINPDVNELVNSDLDI
CIGGTTDTICMLEGEMKEISEAEMLDAIKFGHDAIRRLCALQNEIAAEVAKPARPFAPAV
IPSELTDLVRGLCETRLRELAYTPLRKEDRAEQTAAIYREIIQSTVEHFKAAISPEEIQA
DPSKALCLNEHIIDEQIHAVEKKVMRHMILDDAKRLDGRTLEEVRPISIELGIIPRAHGS
ALFTRGETQALVTITLGTKKDAQSVDNLTNNADKKFMLHYNFPPFSVGETGRIGSTGRRE
IGHGNLAERAIKMVAPPEQEFPYTVRIVSDILESNGSSSMASVCGGTLALMDGGVPIRKP
VSGIAMGLIKEGSNYAVLSDILGNEDHLGDMDFKVSGTRDGITACQMDIKIDGLDYHILE
SALEQARRGRLHILDKMEEAIPSARVELAQFAPRLTTIQVPVDAIGLIIGKGGETIRSIT
EETGAEINIEDDGTVTIACSSVEGTHAALATIKTLLAKPEVGTIYLGKVRDVRDELGAFV
EFLPKTDGLVHISEISATERVAKVSDHLKIGDRIKVKLVDVRKDPRTGKTRFALSMRAVE
TDAANGAPQENNQENQ
NT seq
2211 nt
NT seq
+upstream
nt +downstream
nt
atgatttccatgattatcaacaaagctattgatcttggccagggaaaaataatctctatc
gaaaccggtaaaatggcaaaacaggccgacggctccgtagttgtacgccttggcgacacc
atggtgctggcgacggttgtatcgagcaaaaaaacgcccccaccgaatcaggactacttt
ccgctccaggttgaataccgcgaaaaatattcggcggcgggcaagtttcccggaggcttc
ttcaagcgtgaaagccgcccctccgaaaaagaaattctctcggcaaggctgatcgaccgc
gcactcagaccgctttttcctgacggctacctctttgaaacccagatcatcgtaacggtt
atctcctccgaccagatcaatgatgccgacgtacttggcggtctggctgcatcggcagcc
atcatggtctccgatatccccttccataacgcgatgtccgaagtcagggtgggaagaatc
aacggcaaattcattatcaaccccgatgtcaacgagctggtgaacagcgatctcgatatc
tgtatcggcggaacaaccgataccatctgcatgctcgaaggagagatgaaagagatctcc
gaagccgaaatgcttgacgccatcaagttcggtcacgatgcaatccgcaggctctgcgcg
ctccagaacgagatagcggcggaagttgcaaaacctgcccgtccctttgctccggcagtc
attccttcagaactcaccgaccttgtccgcggtctctgcgaaacccgtctccgggaactt
gcttataccccgctcagaaaggaagatcgcgccgaacagaccgccgccatctatcgggag
atcatacagtcaaccgtcgagcacttcaaagccgccatcagccctgaagagattcaggcc
gatccttcaaaagcgctctgtcttaacgaacatatcattgacgagcagattcatgcggta
gaaaagaaagtcatgcgccacatgattcttgacgacgcaaaacgcctcgacggaagaacc
ctcgaagaggttcgtccgataagcatcgaactcggcatcatcccgagagcccacggctcg
gcactctttaccagaggagagacccaggcgcttgtcaccattaccctcggcacaaagaaa
gatgcacagtcagtcgataacctgacgaacaacgccgacaagaagttcatgctccactac
aacttcccgccattttcagtcggcgaaaccggaaggatcggaagtacgggccgcagggag
atcggtcacggaaatcttgccgaacgggccattaaaatggttgctcctcctgaacaggag
ttcccctacaccgtcagaatcgtttccgacattctcgaatcgaacggatcttcatcgatg
gcctcggtatgcggaggaacccttgcccttatggacggcggcgttccgataagaaaaccg
gtttccggcatagccatggggcttatcaaggaaggttccaactatgcggtactttcggat
attctcggcaacgaagatcatctcggcgatatggatttcaaggtatccggcacccgtgac
ggcattaccgcctgccagatggacatcaagatcgacggactggattaccatattctcgaa
agcgctctcgaacaggcgcgcaggggacgtctgcacattctcgacaaaatggaggaggct
attccctccgcccgcgttgagcttgcgcagttcgctccgaggctcaccaccatccaggta
ccggttgacgccatcggcctcattatcggcaagggcggagagaccatccgcagcatcacc
gaagagaccggagcggaaatcaatatcgaggatgacggaaccgtgaccattgcctgctca
agcgttgaaggcacccacgccgccctggccacgataaagaccctcctggccaaacccgaa
gtcggtacgatctacctcggcaaagtgcgcgacgtgcgcgacgaactcggcgcctttgtt
gaatttcttccgaaaaccgatggacttgtacacatctcggaaatatcggcaaccgaacgg
gtcgcaaaagtgagcgaccatcttaaaatcggcgaccggataaaggtcaagcttgtcgat
gtccgcaaggatccccgtaccggcaaaacccgcttcgcactctccatgagagcggtcgaa
acagatgcggccaacggcgcgcctcaagaaaacaaccaggaaaatcagtaa
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