KEGG   Chlorobium limicola: Clim_0947
Entry
Clim_0947         CDS       T00766                                 
Name
(GenBank) helicase, RecD/TraA family
  KO
K03581  exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
Organism
cli  Chlorobium limicola
Pathway
cli03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:cli00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    Clim_0947
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:cli03400]
    Clim_0947
Enzymes [BR:cli01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.5  exodeoxyribonuclease V
     Clim_0947
DNA repair and recombination proteins [BR:cli03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     Clim_0947
SSDB
Motif
Pfam: AAA_19 AAA_30 HHH_RecD2 OB_YrrC SH3_13 UvrD_C_2 HHH_5 AAA_11 Viral_helicase1 RsgA_GTPase PIF1 Helicase_RecD UvrD-helicase nSTAND3 NTPase_1 DEAD AAA_16 AAA_29 HHH_2 PhoH TrwB_AAD_bind T2SSE AAA_28 ABC_tran AAA_22 cobW MMR_HSR1 AAA_5 AAA_23 SRP54 MeaB ABC_ATPase NPHP3_N P-loop_TraG NACHT AAA AAA_7 SLFN-g3_helicase Pirin AAA_14 ATP_bind_1
Other DBs
NCBI-ProteinID: ACD90023
UniProt: B3EIT2
LinkDB
Position
complement(1035843..1038065)
AA seq 740 aa
MATPSSDTENNAERELRQETVTGTVERVTYHNEENGFSVLKIRARGSRDAVTVVGNSPAI
SPGEFITCTGSWQNNRTHGLQFKADGIDIIQPTTADGIEKYLASGMVKGVGSFYAKKLVK
KFGTGVLDILDSNPERLLEIEGIGRKRLELITKSWEEQKAIREIMVFLQSHGVGIARAFR
IYKTYRQDAIKKVSENPYSLSLDIDGIGFLTADTIASKLGIAHDSLIRAEAGVRHVLQEL
ASSGHCAVPKERLVQESAAMLDISAPIVEEAIAVETGKFNLVRETIDGAEIFYLAPLHRA
EEKTAAALAALLRGRTPWKGIDLQKAVVQIAEETGLQLSPSQKEALALVLTNKATVITGG
PGVGKTTLVNAILRVIRKKTTKILLCAPTGRAAKRLSESTGMEAKTIHRLLEFDPNSGGF
KRSSGNPLEADMVVVDETSMVDIVLMSKLLSAVPAKAALLLVGDADQLPSVGPGAVLTDI
IASDAVPVVRLTEIFRQAARSQIIVNAHRINNGEIPRNAEGEELSDFYVVNSQTPENIHA
KLMQMVTERIPARFGFHPVRDIQVLTPMNRGGLGSRALNAELQKALNGSAEPKVSRFGSI
FSPGDKVIQMVNNYDKEVFNGDIGAITAIDTEESELTVDFDKRPVRYEFSELDELALAYA
TSIHKSQGSEYLAVVIPLAMQHFTLLERNLIYTAVTRGKKLVVIIAQPKALALAVTNRKA
DRRMTTLALKLTEAAGNPNP
NT seq 2223 nt   +upstreamnt  +downstreamnt
atggcgacaccatcttcagataccgaaaacaacgctgaacgcgaactccggcaggaaacg
gttaccggcaccgttgaacgggtaacctaccataacgaggagaacggattttccgtgctt
aaaatcagggcgagaggcagtcgggatgccgtgacggttgtgggcaacagtccggcaata
tctcccggagagtttataacctgcacgggaagctggcagaacaaccgcacccacggcctg
cagttcaaggccgacgggatcgacatcattcagccgacaacggccgacggcatcgaaaaa
taccttgcatccggcatggtcaagggcgtcgggtcgttctacgcaaaaaaactggtcaag
aaattcggaaccggcgtactcgacatactcgacagcaatcccgaacggctgcttgaaata
gagggcatcgggagaaaaaggctggagctgatcacgaaatcctgggaggagcagaaagcc
atccgggaaatcatggtttttctgcagtcgcacggagtcggtatcgcccgggcgttcagg
atctataaaacctatcgccaggatgccatcaaaaaggtttccgaaaacccctacagcctc
tccctcgatattgacggcatcggctttctcaccgccgacaccatcgcctcgaagctcggc
atagctcacgactcgctcatcagggccgaagccggagtgcgccatgttctgcaggaactg
gcctccagcggccactgcgccgtgcccaaagagcggctggtgcaggaatcggccgccatg
ctcgacatctccgctccgatcgtggaagaagccattgccgtggaaaccggcaagttcaat
ctggtgcgcgaaaccattgacggagcagagatcttttatctcgcgccgctccaccgcgcc
gaagaaaagaccgccgcggcgctcgccgctctcctgcgggggaggacgccatggaaaggg
atcgatctgcaaaaagccgtggtgcagattgccgaagagaccggcctgcaactctcccct
tcccagaaagaggcacttgcgcttgtcctcacgaacaaagccaccgtcattaccggaggc
cccggtgtcggcaaaacgacgctcgtgaacgccattctcagggtcatccgaaaaaaaacc
accaaaatcctgctctgcgcccctaccggccgggcggcaaaacggctctcggaatcgacc
ggtatggaagcgaagaccattcaccgcctgcttgaattcgatcccaacagcggcggcttc
aaacgcagctccggaaacccgctcgaagcggatatggtggtcgtcgacgaaacctcgatg
gtcgatatcgtgctgatgagcaagctcctctctgcggttccggcaaaagccgccctgctg
cttgtgggtgatgccgaccagctcccttccgtgggccctggtgcggtacttaccgacatc
atcgcatccgatgcggttcctgtagtacggctgaccgaaattttccggcaggcggcccgg
tcgcagatcatcgtcaacgcccaccgcatcaacaacggcgaaatcccgcgcaacgccgaa
ggcgaagaactgtcggatttctatgtggtgaactcgcagacacccgaaaatatccatgcc
aagctcatgcagatggtaaccgaacgcatcccggcccgcttcggttttcatccggtgcgc
gacattcaggtgctcaccccgatgaaccggggcgggctcggttcgcgtgccctgaacgcc
gaactgcagaaagcgctcaacggcagcgccgagccgaaagtatcgcgcttcggctccatc
ttttcgccgggcgacaaggttatccagatggtcaacaactacgacaaggaggtcttcaac
ggcgacatcggcgccataacggcaatcgacaccgaagagagcgagctgacggtcgatttc
gacaaacggcccgtacgctacgagttcagcgaactcgatgaactcgcgctggcctacgcc
acaagcattcacaaaagccagggctccgaatatctcgccgtcgtcattccgctcgccatg
cagcactttacgctgctcgagcggaacctgatttacaccgccgtcacgcggggaaaaaag
cttgtggtcatcattgcgcagccaaaggccctcgctcttgcagtaacaaacagaaaagcc
gaccgccgcatgaccacgctcgcccttaaactgacggaagccgcaggaaacccgaacccc
tga

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