Chlorobium limicola: Clim_0965
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Entry
Clim_0965 CDS
T00766
Name
(GenBank) Lytic transglycosylase catalytic
KO
K08307
peptidoglycan lytic transglycosylase D [EC:
4.2.2.29
]
Organism
cli
Chlorobium limicola
Brite
KEGG Orthology (KO) [BR:
cli00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
cli01011
]
Clim_0965
Enzymes [BR:
cli01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.29 peptidoglycan lytic transglycosylase
Clim_0965
Peptidoglycan biosynthesis and degradation proteins [BR:
cli01011
]
Peptidoglycan biosynthesis and degradation
Lytic transglycosylase
Clim_0965
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Gene cluster
GFIT
Motif
Pfam:
LysM
SLT
LysM3_LYK4_5
LysM1_NFP_LYK
HTH_7
HTH_Tnp_ISL3
HTH_28
Motif
Other DBs
NCBI-ProteinID:
ACD90041
UniProt:
B3EIV0
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Position
1056063..1057775
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AA seq
570 aa
AA seq
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MLLSAHNPVHCAIARESRSSDGFQSGKSSVAEILDSLVYATYFKDEYFSTSSKMPDRPGF
PSHFVPQYSDSVYAARIAVLDRKTPFNLVYNEHVRGFIRVYAVDKRNSTAKILGLTKVYF
PLFEEQLDKYNVPLEMKYLAIVESALNPTAVSHAGAKGLWQFMYGTGKMYGLESSSFVED
RYDPYKATLAASRHLRDLYNIYGDWFLALAAYNSGPGNVNKAIRRAGGVKNYWAIWDYLP
AETRGYVPAFIAVNYIMNYYKEHNIRPVEPGYLYHDIDTLRVSKMLSFEQINETIGVPRQ
DLEFLNPQYKLGIIPGSDYSSNVLRLPRRYIGPFQKREKEIYAYKSKSILEREQLLARVQ
SFESASPSPVSQTSGDGQVRKVHYVRQGQDLGMIARFYRCEVSEIVRWNSLKTQNVTPGQ
QLVVFAGNDGSVQTSAVSPPPVPKEAYQEKKVERKKEKSETHRVERGETVASIARQFGVS
VESIADLNGLRGNMSITPGQKLKITGSSSEKSVSKKQVSPKATYHKVRKGETLYSIADRY
GVSVGDLTDWNDIGRKKSLRPGQKLKVASM
NT seq
1713 nt
NT seq
+upstream
nt +downstream
nt
gtgctgttgtctgctcataacccggttcactgcgcaattgcaagagagtccaggtcgagt
gacggttttcagtccggaaaatcgtcggtagccgaaattcttgacagtcttgtgtatgcg
acctatttcaaggatgagtatttttccacttcatcgaaaatgcccgacaggccgggtttc
ccttcccatttcgttccgcagtacagcgattcggtctatgccgcacgaatagccgtttta
gatcgtaaaacaccgttcaatcttgtttataacgaacacgtcagaggttttatcagggtt
tatgctgttgacaaacggaacagcaccgcgaagattcttggtttgaccaaggtctatttt
cctctttttgaagagcagctggacaagtataacgtccctcttgaaatgaagtatctggcc
atcgtcgaatcggctctcaatcctacggcagtctcccatgccggagcgaaaggattgtgg
cagttcatgtacggcaccggtaaaatgtacggactcgagtcttcgtcgtttgttgaagac
cgttatgatccctataaggccacgctcgctgcaagtcgccatcttcgcgatctctacaat
atctacggagactggtttcttgcccttgcggcatacaactccggaccaggaaatgtcaac
aaggcgatcagacgggccggcggagtaaagaattactgggcgatctgggactatcttcct
gcagagacacgaggctatgttccggcattcattgccgtgaactacatcatgaactattat
aaggaacataatattcgtcctgtcgagccgggatacctctatcacgatatcgatacgctg
cgggtatcgaagatgctgtcgttcgaacagatcaatgagactatcggcgttcccaggcag
gatcttgaatttctcaatccacagtataaactcggcattatacccggatccgattattca
tcgaacgtgctcaggcttccgcgcagatatatcggaccgttccagaagcgcgagaaagaa
atctatgcatacaagtcgaaaagcatactggaacgggaacagcttcttgcaagggtgcag
agtttcgagtccgcttcgccttctccggtgagccagacgtcgggagacggtcaggttcgg
aaagttcactatgtgcgtcagggacaggacttggggatgattgcccgtttttaccggtgt
gaagtcagtgaaatcgttcgctggaatagtctgaaaactcaaaatgttacccctggtcag
cagctggttgtttttgccggaaatgatggttccgttcagacttcggcggtaagcccgccg
ccggttccgaaagaggcttatcaggaaaaaaaggttgaacggaagaaggaaaaatccgaa
acgcaccgggttgaaagaggggagacggtcgcatctattgccagacagttcggagtgagc
gtcgagagcattgccgatctcaacggcttgaggggtaatatgagcattacgcccggtcag
aagctgaaaattaccgggtcttcatccgaaaaatccgtatccaaaaaacaggtgtcgcca
aaggctacatatcataaggtcagaaaaggagagacgctttattctattgccgaccgttac
ggtgtgagtgtcggcgatcttacggactggaacgatatcggcaggaaaaagtcactgcgg
ccgggccagaagctcaaggtcgcttccatgtga
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