Chlorobium limicola: Clim_1854
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Entry
Clim_1854 CDS
T00766
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cli
Chlorobium limicola
Pathway
cli03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cli00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Clim_1854
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cli03019
]
Clim_1854
03009 Ribosome biogenesis [BR:
cli03009
]
Clim_1854
Enzymes [BR:
cli01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Clim_1854
Messenger RNA biogenesis [BR:
cli03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Clim_1854
Ribosome biogenesis [BR:
cli03009
]
Prokaryotic type
rRNA helicases
Clim_1854
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
AAA_22
EST1
Motif
Other DBs
NCBI-ProteinID:
ACD90893
UniProt:
B3EF31
LinkDB
All DBs
Position
complement(2034417..2036249)
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AA seq
610 aa
AA seq
DB search
MLSSIVNNLLQEKDSMIEEQPSILNFSNLELAEPLLRALEEVGYEKPTPIQAQTIPLLLE
GRDVLGQAQTGTGKTAAFALPVLSNIVLSKTEPQALVLTPTRELAIQVAEAFHRYAEYLK
GFHVVPIYGGQDYGTQLRMLKRGVHVVVGTPGRVMDHMRRGSLSLSSLQCLVLDEADEML
RMGFIDDVEWILDQTPESRQVALFSATMPAPIRRIAQKHLKSPAEVIIQNKTTTVETIRQ
RYWIVGGSHKLDVLTRILEFEPFDGILIFVRTKTMTLELAEKLQARGYAASALNGDMAQN
QRERTVDQLKDGSLSIVIATDVAARGLDVDRISHVINYDIPSDTESYVHRIGRTGRAGRS
GEAILFVSPREKNMLYAIEKATRKRIELMELPSTEIINDKRVAKFKQRITDTIAAEDLEF
YTRLLEQYCREHDVTELEAAAALASMFQGETPLLLSSKPERPARQEGRDRPDSRDRSERD
RGASRSPKRDGLYSDERRESYRIEVGSTHGVKPGNILGAILNEVGLDPEAVGRITVNDTY
STVELPAGMPNEVFHEMRKVRVCGRQLRLTKSEERSQSGYAGTGKRTGYKPKSDSKSEPS
YFTGHKKKRK
NT seq
1833 nt
NT seq
+upstream
nt +downstream
nt
atgctttcaagcattgttaataatttattacaggaaaaggacagtatgattgaagaacag
ccatccattttgaatttcagcaatttagagcttgctgaaccgttgctcagagctcttgaa
gaggtcgggtacgaaaagcctactccaattcaggctcaaaccattccgttacttctcgaa
ggccgggacgttctcggtcaggcacagacgggtaccggcaagaccgcggctttcgcgctt
ccggtgctttccaacatcgtgctttcgaaaaccgaaccccaggcgctggtgctgactccg
acaagggagctggccattcaggttgccgaggcgtttcaccgttatgccgagtatctgaaa
gggtttcatgtggtgccgatctatggtggtcaggattacggaacgcagctgcgcatgctg
aagaggggcgtgcatgtggttgtgggtactccgggtcgcgtaatggatcatatgcgccgc
ggttccctctcattgagttctttgcagtgtctggtgcttgacgaggcagacgagatgctt
cgcatgggctttatcgatgatgtcgagtggatactcgatcagaccccggaatcccgccag
gtcgctcttttttcggcaaccatgcctgctccgattcgccgtattgcccagaaacatctc
aagagccccgctgaagtcatcattcagaataaaacaaccacggtcgagaccattcgtcaa
cggtactggattgtcggcggaagccataagctcgatgtgctgaccaggattctggaattc
gagccgtttgacggcattcttatttttgtccgtacgaaaaccatgacgctcgaacttgcc
gaaaaactgcaggcaaggggatatgccgcttcggcgctgaacggcgatatggcgcagaat
cagagggagcggacggtggatcagctcaaggatggctcgctgagcatcgttatcgctacc
gatgtggctgcaagaggactggatgtcgatcgcatcagtcatgtaatcaattacgatata
ccttcggatactgagtcgtacgttcaccggatagggcgtacagggcgtgccggaagaagc
ggcgaagctattctgttcgtttctccgagagagaaaaatatgctctatgccatcgaaaag
gcgacccggaaacggatcgaactgatggagcttccttcgacggagattatcaacgataaa
cgggttgcaaagttcaagcagcgtattaccgataccattgctgccgaggatctggagttt
tacacaagacttcttgaacagtattgccgtgagcatgatgttacggagctcgaggccgcg
gcagctctcgcttcgatgtttcagggcgaaactccgcttttgctctcttcgaaacctgag
agaccggctcgtcaggaggggcgtgatcgtccggatagccgcgaccgttcggaaagggat
cggggcgcttcgagaagcccgaaaagggatggtctgtattccgacgaaagacgggagagc
taccgcatcgaggttggcagtacgcatggcgtgaaaccgggcaatattcttggagcgatt
ctcaacgaggtcggtctcgatccggaagcggtcggaagaattaccgtaaacgatacctac
agcaccgtggagctgccggcaggcatgccgaacgaagtgttccatgaaatgcgcaaggtg
agggtgtgcggacgtcagctgcgccttacgaagtccgaagagcgttcccagagcggctat
gcgggcacaggcaagcggacaggttacaagccgaaatcggattcaaaaagcgaaccttct
tattttaccggtcataaaaagaagcggaagtaa
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