KEGG   Chlorobium limicola: Clim_2461
Entry
Clim_2461         CDS       T00766                                 
Name
(GenBank) type I site-specific deoxyribonuclease, HsdR family
  KO
K01153  type I restriction enzyme, R subunit [EC:3.1.21.3]
Organism
cli  Chlorobium limicola
Brite
KEGG Orthology (KO) [BR:cli00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02048 Prokaryotic defense system [BR:cli02048]
    Clim_2461
Enzymes [BR:cli01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.21  Endodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.21.3  type I site-specific deoxyribonuclease
     Clim_2461
Prokaryotic defense system [BR:cli02048]
 Restriction and modification system (R-M system)
  Type I R-M system
   Clim_2461
SSDB
Motif
Pfam: SWI2_SNF2 HSDR_N DUF559 T1RH-like_C T1R_D3-like ResIII MTES_1575 MetJ
Other DBs
NCBI-ProteinID: ACD91481
UniProt: B3EIG9
LinkDB
Position
complement(2694087..2698298)
AA seq 1403 aa
MTSNPYTEDQLVEQPAIGLFAELGWATVSALDETFGVAEPSPGHFGHSLPEDEGNGNSRI
SLGRETKGDVVLASRLGVALVRLNPLLPPEAITAAMDELTRDRSAMLLEAANREVYLLLK
EGIRVSVADTEPSPGFPLPEGEGAEAPPSTFGRRAGNNDSLQKYGGQKIVRVRVVDWEHP
ENNDFLLVSQFSVTGQLYTCRPDLVGFVNGLPMVVIELKKPGVPARTAFDENLRHYKEQI
PSLFWYNALLIASNGTESRVGSLTADWERFFEWKRIARENEPRRVSLEVMLRGTCDRSRF
LDLVENFTLFSEHKAGFATPATLTPTPLPGVEGRSKSGLVKIIGQNHQFLGVNAAIASLL
RIRKEYAVAATLTPTPLPEVEGQYRGGFYYSGLVERARELRQQQTPAEDIVWELLRDHRF
EGLKFRRQHQIGNYIADFFCSEHKLVVEVDGDVHRSPEVVAKDSQRDAYLRSLGYTVIRF
GNQLVLNNPAEFLNQIRAALQLPSTTGRGAGGEGNTPGSNGIGESLTHPSTAGRGAGGEG
NTPGPKVIGAALTYPSTTGRGAGGEGNTPRPKVIGAALTYPSTTGRGAGGEGNTPRPNGI
GVFWQTQGSGKSFSMVFFAQKVLRKVAGNWTFVVVTDRIELDEQIAKTFKAAGAVSKAEG
DACHASSGDHLRQLLRGNHRYVFTLIHKFRSETPSPRPSPKGRGGEEVCSEIPSLGFSPT
GRGGEGICSETPGAGNNGIMPVLSDRADIIVLTDEAHRSQYDTLALNMRSALPNAMFLAF
TGTPLIAGEERTKEVFGDYVSIYDFQQSVEDGATVPLFYENRTPELQLVNPDLNDDIYRL
IEDAELDPDQESKLERELNRQYHLLTRDDRLDTVAKDIVRHFLGRGFIGKAMMVSIDKAT
AIRMYDKVQRFWMEETGLVRQQLVRYDLSSERKGELQKRLQVLESTDMAVIVSPGQNEIG
QMQQIGLDIVKHRKRMVESQPALDEKFKDSDDTLRIVFVCAMWLTGFDAPSCSTVYLDKP
MRNHTLMQTIARANRVFPGKHSGMIVDYANVFASLEKALAIYGAGKGGHNPVRGKDALVE
ELRKAVELATAFCMEHGVHLAGIEEAASGMERLQRIEDAVNALIGDTLRREFFGHERLVR
TLYQAVKPDPAAIAFSERVACIAAIAEAIRGKLNPVAPDISTIMQGIGRLLDESITGHAI
RESGPPVLDLSKINFKALSDRFRQSKHRNTDLEMLKAAINAKLENMIRLNRTRADFAGKF
EELIAGYNAGSRSIEDLFDELLKLSLSLSDEEQRHVRENMNEEELVIFDILTRPAPELNT
DERSEVKRVARELLVKIKGLLVLNWRQKTEARSRLKLTIEDALDQGLPRAYTPEIYRQKC
SAVFEHVYESYPERDAGVYAEVE
NT seq 4212 nt   +upstreamnt  +downstreamnt
atgaccagcaacccctacaccgaagaccagcttgtcgagcagcccgctatcgggttgttt
gcggagcttggctgggcaacggtgtcggcgttggatgagacattcggcgttgccgaaccc
tcacccggccactttggccactctctcccggaggacgagggtaatggaaattcccggata
tcattagggcgggagacgaagggggatgtggtgctggcgtcacggttgggtgtggcgttg
gtgcgcttgaaccctttgctgccgcccgaggcaatcaccgccgcaatggatgaattgact
cgcgaccgttcagccatgctcctggaggcagcgaatcgcgaagtctatctgctgctcaag
gaggggattcgcgtcagcgttgctgacaccgaaccctcacccggtttccctctcccggag
ggcgagggtgcagaagcacctccatctacctttgggagaagggcaggaaataacgattcg
ctacagaaatatggagggcagaagattgtccgtgtgagagttgttgattgggagcatccg
gagaacaacgattttctgctggtgagccagttcagcgttacaggacagctctacacctgc
cgccctgatctggtcgggttcgtgaacgggctgccgatggtggtgatcgagctgaaaaag
cccggtgtgcctgcccggacggctttcgacgagaatctcaggcactacaaggagcagatt
ccttcgcttttctggtataatgcgctgcttatcgcttcgaacggtacggaaagccgtgtc
ggttcgctcactgcggattgggaacggtttttcgagtggaagcgcatcgcgcgggaaaac
gagccccgcagggtgtcgctggaggtgatgcttcgcggcacgtgcgaccgcagtcgtttt
ctcgacctcgttgagaactttacgcttttttcggagcataaggcgggatttgcaactccc
gccaccctcaccccaacccctctcccaggggtagaggggcggagtaaaagcgggctggtg
aagattatcgggcagaatcaccagtttctcggggtcaatgcggcaattgcgtctttactc
aggattcgtaaagaatatgcagttgccgccaccctcaccccaacccctctcccagaggta
gaggggcaatatcgtggcggtttttattattcgggactcgttgaacgcgcgagggaatta
cggcagcagcagacaccggcagaggatatcgtatgggagcttttgcgtgaccatcggttc
gaggggctgaagtttcgtcgtcaacaccagatcggaaattatattgcagatttcttttgt
tcagagcataaacttgttgtcgaagttgatggtgacgttcatcgttcgccggaggtggtt
gcgaaggattcacagcgggatgcatatttgcgttctcttggttataccgttattcggttt
gggaatcagttggtattgaataaccctgcagagtttctgaatcaaatcagggcggcattg
cagctcccctctaccactgggagaggggctgggggtgaggggaacacaccaggatcgaat
gggattggtgaatcattgacgcacccctctaccgctgggagaggggccgggggtgagggg
aacacaccaggaccgaaagtgattggtgcagcattgacttacccctctaccactgggaga
ggggccgggggtgaggggaacacaccaagaccgaaagtgattggtgcagcattgacttac
ccctctaccactgggagaggggctgggggtgaggggaacacaccaagaccgaatgggatt
ggtgtgttctggcagacgcagggcagcggcaagagtttttcgatggtcttttttgcccaa
aaggtgcttcgaaaggttgcgggcaactggaccttcgtggtggtgaccgaccgtattgag
cttgacgagcagatagcaaaaaccttcaaggctgccggtgcagtaagcaaggccgaaggc
gatgcatgccacgcttcgagcggcgatcatctccggcaactgctgcggggcaatcaccgc
tacgtctttacgctgatccataagtttcgttccgaaacaccctcaccccgtccctctccc
aaaggtagagggggggaagaagtatgttccgaaataccctcactcgggttctctcccaca
ggtagagggggggagggaatctgttccgaaacaccgggtgcgggtaacaatggaattatg
ccagtgctgagtgacagggcggatattattgttttgacagacgaggcgcaccgcagccag
tacgacacgctggcgctgaatatgcgttcggctcttcccaatgccatgtttctcgccttt
accggtacaccgctcattgccggagaggagcgcaccaaagaggttttcggcgattacgta
tccatttacgacttccagcagtccgtcgaggacggagctacggttccgcttttctacgag
aaccgtacgcccgagctgcaactggtcaatcccgacctgaacgacgatatctaccggctt
atcgaggatgccgaactcgatcccgatcaggaatcgaagcttgagcgggagctgaaccga
cagtatcatttgctgacgcgcgacgaccggcttgataccgttgcaaaggacatcgtgcgg
cattttctcggacgggggttcatcggcaaggcgatgatggtctctatcgacaaggccacc
gcaatcaggatgtacgacaaggtgcaacggttctggatggaagagacggggcttgtccgg
cagcagcttgtccgttatgatctttcgtctgaaagaaaaggggaactgcagaagcggctt
caggtgcttgagagcaccgacatggccgtgatcgtttctcccggccagaacgaaatcggg
cagatgcagcagatcggcctcgatattgtgaagcaccgcaagcgcatggtcgagtcgcag
ccggctctggatgagaagttcaaggacagcgacgatacgctgagaatcgtatttgtttgc
gccatgtggctgaccggttttgacgcgccgagctgttcgacggtctatctcgacaaacct
atgcgcaaccatacgctcatgcagactatagcgcgggcaaaccgcgtttttcccggcaag
cacagcggcatgattgtggattacgcgaatgtgttcgcctcgcttgaaaaggcgcttgct
atctacggtgcagggaagggcggtcataatccggtgagggggaaagatgcgcttgtagaa
gaattacgcaaggcggtcgagctggcaacagccttctgcatggaacatggggtgcatctt
gccggaatcgaagaggcggcttcaggtatggaacggctgcagcgtatcgaggatgcggta
aacgccctgattggggataccctgcggcgggagtttttcggccatgaacgtcttgtccgt
acgctctaccaggcggtaaaacccgatccagctgcgattgctttttcggagcgggtggcg
tgtattgcggcaattgctgaagcgatacgggggaagctgaatcccgttgcgccggatatt
tccacaatcatgcagggaatcggcagattgcttgacgaatccattaccggtcatgctatc
cgcgagtcagggccgccggtgctcgatctctcgaaaatcaatttcaaggcgctctctgat
cggttcaggcaatcgaagcacaggaacaccgatctggaaatgctcaaggccgcgattaac
gccaagctggaaaacatgattcgcctcaatcgcacaagggcggattttgccgggaagttc
gaagaattgattgcgggctacaatgcgggcagtcgaagcatcgaagatctctttgacgaa
ctcctcaagctgtcgctcagcctgagcgatgaggagcagcgccatgttcgggaaaatatg
aacgaagaggagctggttattttcgacatcctcacccgtccggcaccggaactcaatacc
gatgaacgcagcgaagtgaaaagggttgcccgcgaactgcttgtcaagatcaagggtctt
ctggtgctgaactggcggcaaaaaacagaggcacgttccaggctgaagctcaccatcgag
gatgccctcgaccagggccttccccgagcctatacgccggaaatctaccggcagaaatgc
tccgccgtattcgaacatgtctacgaatcctatcccgaacgcgatgcgggggtttacgcc
gaggttgagtga

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