Corynebacterium liangguodongii: C3E79_04350
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Entry
C3E79_04350 CDS
T07317
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
clia
Corynebacterium liangguodongii
Pathway
clia03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
clia00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C3E79_04350
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clia03019
]
C3E79_04350
03009 Ribosome biogenesis [BR:
clia03009
]
C3E79_04350
Enzymes [BR:
clia01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
C3E79_04350
Messenger RNA biogenesis [BR:
clia03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C3E79_04350
Ribosome biogenesis [BR:
clia03009
]
Prokaryotic type
rRNA helicases
C3E79_04350
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
CMS1
UvrA_inter
adh_short
DUF6892
Motif
Other DBs
NCBI-ProteinID:
AWB83808
UniProt:
A0A2S0WDF9
LinkDB
All DBs
Position
903339..905384
Genome browser
AA seq
681 aa
AA seq
DB search
MSTSENATGSEFEPDMTLSENQDAPQAVAEEDTRDAGDSENAGASATPEATATENEHNED
DAPSTEAAPANPADEVAEEPANGFEALDLPKDVVNAVKKVGFEQPSPIQAQTIPLLMEGR
DVVGLAQTGTGKTAAFALPVLSQIDPSLRHPQALVLAPTRELALQVADSFQSFADHLGKI
QVLPIYGGQAYGIQLSGLRRGAQIIVGTPGRVIDHLEKGSLDISNLRFLVLDEADEMLNM
GFQEDVERILADTPDDKQVALFSATMPNGIRRISKQYLNDPAEVTVKSETRTNTNITQRY
LFTAHRNKLDAITRILEVTEFEAMIVFVRTKHETEELAEKLRARGFSAAAINGDIAQQQR
ERTVDQLRDGRLDILVATDVAARGLDVERISHVFNYDIPNDTESYVHRIGRTGRAGRTGE
AILFVTPRERRMLRSIERVTNATIEEMDLPTVDEVNESRKLKFMDSITESLESKDQDVFK
AMVREYSSANDVPMDDIAAALAAQANAGDEFLMKEPPKDKRDRRDRDFDRDDRGGRGRRD
RFDRDDRGGRGRRDRFDRDDRGGRGGRGRFGDDSENFDTYRLDVGKRQHVRPGAIVGALA
NEGGLNSRDFGRITIGGDFTLVELPKNMDRSVLDRLSDTRISGQLINIQRDKGGAARRDS
DRGGRGGGFRGRGGQGRGWRD
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atgagcacttccgaaaacgctaccggcagcgagtttgagccggacatgacactgtcggaa
aatcaggatgccccgcaggctgtcgcagaagaagacaccagggatgcgggagattctgag
aacgccggcgcttcggccacgcccgaagccaccgccactgagaatgaacacaacgaagat
gacgccccgtctaccgaggctgccccggcgaatcccgccgacgaggtagctgaagagccc
gccaacgggttcgaagccctcgacctgccgaaagacgtcgtcaacgccgtgaagaaggtc
ggcttcgagcagccctcgcccattcaggcgcagaccatcccgctgctcatggagggccgc
gatgtcgtcggcctcgcgcagaccggtaccggcaagaccgccgcgttcgcgctgcccgtg
ctcagccagatcgatccttcgctgcgccacccgcaggcgctcgtccttgcgccgacgcgc
gagctcgccctgcaggtcgccgactccttccaatccttcgccgaccacctgggcaagatc
caggtcctgccgatctacggcggccaggcctacggcatccagctctccgggctgcgccgc
ggggcccagatcatcgtcggcaccccgggccgcgtcatcgaccacctggagaagggctcg
ctggacatctccaacctgcgcttcctcgtgcttgatgaggccgacgagatgctcaacatg
ggcttccaggaagacgtcgagcgcatcctcgcggataccccggacgacaagcaggtcgcg
ctgttctcggcgacgatgccgaacggcatccgccggatttccaagcagtacctcaacgac
ccggccgaggtgacggtcaagtccgagacccgcaccaacaccaacatcacgcagcgctac
ctgtttaccgcgcaccgcaacaagctcgacgcgatcacgcgcatcctcgaggtcaccgag
tttgaggcgatgatcgtgttcgtgcgcaccaagcatgagaccgaggagctcgccgagaag
ctgcgcgctcgcggcttctccgccgccgcgatcaacggcgacatcgcccagcagcagcgc
gagcgtactgtcgatcagcttcgcgacggccggctcgacatcctggtggccaccgacgtc
gccgcccgcggcctcgacgtcgagcgcatcagccatgtgttcaactacgacatcccgaac
gatacggaaagctacgtccaccgcatcgggcgcacgggccgtgccgggcgcaccggcgag
gcgatcttgtttgtcaccccgcgcgagcgccgcatgctgcgctctatcgagcgcgtgacc
aacgcgacgatcgaagagatggacttgccgacggtcgacgaggtcaacgagagccgcaag
ctgaagttcatggactcgatcacggagtcgctggagtcgaaggaccaagacgtgttcaag
gccatggtgcgcgaatactccagcgccaacgacgtgcccatggacgacatcgccgcggcg
ctggccgcgcaggcgaacgccggcgacgagttcttgatgaaggagccgccgaaggacaag
cgtgaccgccgcgaccgcgatttcgaccgcgacgaccggggtgggcgcgggcggcgcgac
cggttcgaccgtgatgatcgcggtgggcgcgggcggcgcgaccggttcgaccgtgatgat
cgcggcgggcgcggtggccgcgggcgctttggcgacgacagcgagaacttcgatacctac
cgcctcgatgtgggcaagcgccagcacgtgcgccccggcgccatcgttggtgcgctcgcg
aacgagggcgggctgaactcccgcgacttcggccgtatcaccatcggcggtgacttcacg
ctcgtggagctgccgaagaacatggaccgctccgtgctagacaggctttccgatacccgc
atttcgggacagctgatcaacattcagcgcgacaagggcggtgcggcgcgcagggattcc
gaccgcggcggccgcggcggcgggttccgggggcgcggcggacagggccgcggctggcgg
gactag
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