Nitratidesulfovibrio liaohensis: KPS_000231
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Entry
KPS_000231 CDS
T09362
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
clih
Nitratidesulfovibrio liaohensis
Brite
KEGG Orthology (KO) [BR:
clih00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clih03019
]
KPS_000231 (hrpB)
Enzymes [BR:
clih01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
KPS_000231 (hrpB)
Messenger RNA biogenesis [BR:
clih03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
KPS_000231 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
HA2_N
AAA_30
AAA_19
ResIII
Motif
Other DBs
NCBI-ProteinID:
WMW65724
UniProt:
A0AA51US94
LinkDB
All DBs
Position
242856..245693
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AA seq
945 aa
AA seq
DB search
MTASFPPDARIHSPVASAIHPLVHLLATGAALPGAPGVPRLPVDAELPHLLGVLADGVRA
VLQAPPGAGKTTRVPLALLAAPWLDGRKVVLLEPRRLAARAAARRMAATLGEAVGDTVGY
RMRLDTRVGPHTRVEVVTEGVLTRMLQTDPELADVGCVIFDEFHERSLHADLGLALCLDC
QEGLRPDLRLVVMSATLDCGPVANLLDGCPVIESAGRAFPVDTRHLPPVRNWLPYDTTPP
GVLEDAVADAVRRALHEGPGSLLVFLPGAGEIRRTAERLAGLADTPHGPVTVHALYGDLP
PELQDAAIAPAPPGTRKVVLATAIAETSLTIDGVRVVIDTGLAREPRFDPRSGMSRLVTE
RVSLAGADQRRGRAGRTGPGTCWRLWREGEEAVLRPFARPEILDADLAPLLLELALWGVP
DASALRWLDGPPQANLAQARELLTLLGALDAAGRITPHGRRVAALPLHPRLAHMVVRAGE
LGLGATACCVAALLEERDPLRDAGADMRLRVALLAGDGRGAGNGTHGPMLTRLREAARQV
ARLAGVDLDAAGSRGKRTRQGTRPDPEATGEVLAPAYPDRVAEGRGQGQFRLACGRGAYL
PPEDPLSRESFLAVGDMDGDAARGRIRRCAPVSRAHIEEAFGASIVEGAFVVWDDRAEAV
AARRQRRLGALVLDDAPHDAADPEAVTAAVVTGIRYIGLHCLPWTPELEQWRARVTLLRG
LEERETGRTAEDALPATTCPDASACPGEPIWPDVSDAALLAGLEHWLAPYLSGITRRTQF
ARIDLAGALAALLPWELARRLDAEAPERIEVPSGSQVLVDYAAEGGPVLAVKLQEMFGAR
ETPRVAAGRVPLVVHLLSPAGRPLQVTRDLAGFWRTGYPAVRAEMRGRYPKHPRPEDPPA
APPTRLTTRRMQQAATAGAAPGNGVGNTSGKGGAIGGGKGGGRTR
NT seq
2838 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcatcctttccgcccgacgcccggatacattcccccgttgcttccgccatccat
ccgcttgtccacctgctggccaccggcgcggcgttgccgggcgcgcccggtgttccccgg
cttccggtggacgccgaactgccgcacctgctcggggtgctggccgatggcgtgcgtgcg
gtgttgcaggccccgcccggcgcgggcaagaccacccgcgtgccgctggccctgctggcg
gccccctggctggatggacgcaaggtggtgctgctggagccccggcgccttgccgcgcgg
gcggcggcccggcgcatggcggccaccttgggcgaggcagtgggcgacaccgtgggctac
cgcatgcggctggatacccgcgtggggccgcacacccgagtggaagtggtgaccgaaggc
gtgctgacgcgcatgctccagaccgatccggaactggccgacgtgggctgcgtgatcttt
gacgaatttcacgagcgcagtctgcacgcggacctgggcttggccctgtgcctggattgc
caggaagggctgcggccggacctgcggttggtggtcatgtcggccacgctggattgcggc
ccggtggcgaatctgctggacgggtgcccggttatcgaaagcgcggggcgcgcctttccg
gtggatacccgccacctgccgcccgtgcgcaactggctgccctacgacaccactccgccc
ggcgtgctggaggacgcggtggccgacgccgtacgccgcgccctgcacgaggggccgggc
agcctgttggtgttcctgccgggggcgggggaaatccggcgcaccgcggaaaggctggcg
gggctggcggacacgccgcatggcccggtgacggtgcatgccctgtacggcgacctgccc
ccggagcttcaggacgcggccatcgcccccgcgccgcccggcacgcgcaaggtggtgctg
gctacggccattgccgagaccagcctgaccatcgacggcgtgcgggtagtcatcgacacc
ggtcttgcgcgggagccgcgttttgacccgcgttccggcatgtcgcggctggtgaccgag
cgggtctcgctggccggggcggaccagcgccggggccgcgccgggcgtaccggcccgggc
acatgttggcgactgtggcgcgagggagaggaggccgtgctgcgcccctttgcccgaccg
gagattctggacgccgaccttgcgccgcttctgctggaactggccctgtggggcgtaccg
gatgcctcggccctgcgctggctggatggaccgccgcaggccaacctggcccaggcgcgc
gaactgctgaccctgctgggcgcgctggacgcggcagggcgcatcacgccccatggcagg
cgggtggccgcgctaccgctgcatccgcgtctggcgcacatggtggtgcgggccggggaa
ctgggccttggcgccacggcctgttgtgtggcggccctgctggaagagcgcgatccgctg
cgcgatgcgggggcggatatgcggctgcgggtggccctgctggcaggggacgggcgtggc
gcgggcaatgggacgcatggtcccatgctgacccgcctgcgcgaggctgcccgccaggtg
gcccggctggctggcgtggaccttgatgccgccggaagccgggggaagcgcacccggcaa
ggcacgcggcccgacccggaagccacgggcgaggtgctggccccggcctatccggatcgg
gtggccgaggggcgcgggcaggggcagttccgtctggcctgcgggcgcggggcctatctg
ccgccggaagacccgctgtcacgcgaatcctttctggccgtgggcgacatggacggtgac
gcggcgcgcggacgcatccgccgttgcgcgccggtgtcgcgagcgcacatcgaggaagcg
tttggcgcctccatcgtcgagggggccttcgtggtctgggacgaccgtgccgaggccgtg
gccgcgcggcggcagcggcggctgggtgcgttggttctggacgacgcgccccacgacgcg
gcggacccggaggcggtcacggcggcggtggtgacgggcatccggtatatcgggctgcat
tgcctgccgtggacgccggaactggaacaatggcgcgcgcgggtgaccttgctgcgcggg
ctggaggagcgcgagacgggccggacggcggaagatgcgttgcccgcgactacttgcccg
gacgcatctgcctgtccgggcgagcccatctggccggacgtgtccgacgcggccctgctg
gccgggctggagcactggctggcaccgtacctgtccggcattacccggcgcacgcagttc
gcgcgcattgatcttgcgggcgcgctggcggccctgctgccatgggaactggcgcggcgg
ctggacgccgaggccccggaacgcatcgaggtgccgtccggctcgcaggtgctggtggac
tatgcggcggaaggtggtccggtgctggcggtgaagttgcaggaaatgttcggcgcgcgg
gaaacgccccgcgtggccgcagggcgcgtgccgctggtggtgcacctgctgtcgcccgcc
ggtcggccattgcaggtcacccgcgacctagccgggttctggcgcaccgggtaccctgcg
gtgcgggcggagatgcggggccgctaccccaagcacccccggccggaagatcccccggcc
gcaccgcccacccggctgaccacgcggcgcatgcagcaggcggccacggctggcgcagca
ccggggaatggcgtgggcaacaccagtgggaagggcggcgcaataggcggcggcaagggt
ggggggcgcacccgctga
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