KEGG   Nitratidesulfovibrio liaohensis: KPS_003371
Entry
KPS_003371        CDS       T09362                                 
Name
(GenBank) ribonuclease J
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
clih  Nitratidesulfovibrio liaohensis
Pathway
clih03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:clih00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    KPS_003371
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:clih03019]
    KPS_003371
Messenger RNA biogenesis [BR:clih03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     KPS_003371
SSDB
Motif
Pfam: RNase_J_b_CASP RNase_J_C RMMBL Lactamase_B_2 Lactamase_B Anti-Pycsar_Apyc1
Other DBs
NCBI-ProteinID: WMW65257
UniProt: A0ABY9R235
LinkDB
Position
complement(3955893..3957554)
AA seq 553 aa
MADQTPHLTITPLGGLGEIGLNCQIWSTPDSMVLVDCGLMFPEDYHLGVDVVIPRFDHVL
QNRHRVRGIVLTHAHEDHIGALPWLMPHLKAPIYGSRFTLALVEHKLREHGLADRVELVP
VSPDAPLVLGDMTFRFLPVCHSIIEGYALAVETPAGRVVHTGDFKIDPNPLSGPGTDLAL
FRDFAGEEGVRLLLSDSTNIERDGQSLGEREIMDTFRQLFQEAEGRIVVTLFSSHIQRIQ
EVFDLASEFGRKVVVSGRSLMNNIEIARNLGFLRAEAGMILDAVTMPPMADRDLVLLVTG
SQGEPLSALSRIIMGEHKQLCIHRGDTVVMSSRFIPGNARAITKLINELYRLGAEVYYDK
VRSIHASGHAHRDELRAMIEAVRPRYFVPVHGEYRHLVKHCRLAQECGVAQERTIILENG
DPITLTPDSVRFEEHVPVEFILVDGKGVGDVGHSVLKERHILGGEGMVIVVLVVDDTGWE
VLHGPEMLSKGFVFEQHYNHVLEDAKCIVLDIFENIPPGETERLQDRIRSSLRRFFRKVL
ERDPIVVPVITTI
NT seq 1662 nt   +upstreamnt  +downstreamnt
atggcggaccagaccccgcacctgaccatcaccccccttggcggactcggagagatcggc
ctgaactgccagatctggtccacgccagactccatggtcctggtggactgcggcctgatg
ttccccgaagactaccaccttggcgtggacgtggttattccgcgcttcgaccacgtgttg
cagaaccgccaccgggtgcgcggcatcgtgctgacccacgcgcacgaggaccacataggc
gcgctgccgtggctgatgccccacctgaaggctcccatctacggctcgcgcttcaccctg
gcccttgtggaacacaagctgcgcgaacacggcctggccgaccgtgtggaactggtgccc
gtctcgcccgatgcgccgctggtgctcggcgacatgaccttccgctttctgccggtgtgc
cattccatcatcgaagggtacgccctggccgtggaaaccccggcgggacgcgtggtgcac
accggcgactttaagatcgaccccaatcccctgtccggccccggcacagaccttgcgctg
ttccgcgactttgccggtgaagagggcgtgcgcctgctgctgtccgactccaccaacatc
gagcgtgacggccagtcgctgggcgaacgcgagatcatggacaccttccgccagctcttt
caggaggcggaagggcgcatcgtggtcacgctgttctccagccatatccagcgcatccag
gaagtgttcgacctggccagcgaattcggacgcaaggtggtggtcagcggccgcagcctg
atgaacaacattgagatagcgcgcaacctgggctttctgcgggcagaggcgggcatgatc
ctggacgccgtgaccatgccccccatggccgaccgcgacctggtgctgctggtcaccggc
tcgcagggcgagccgctgtcggccctttcgcgcatcatcatgggcgagcacaagcagctg
tgcatccaccggggcgacactgtggtcatgtcctcgcgcttcatccccggcaacgcgcgg
gccatcaccaagctgatcaacgaactgtaccggctgggcgcggaagtatactatgacaag
gtgcgctccatccacgcatcgggccacgcccaccgcgacgaattgcgcgccatgatcgag
gcggtgcgcccccgctacttcgtgccggtgcacggcgaataccgccatctggtcaagcac
tgccgcctggcgcaggaatgcggcgtggcgcaggaacgcaccatcatccttgaaaacggc
gaccccatcaccctcactccggacagcgtgcgtttcgaagagcacgtgccggtggaattc
attctggtggacggcaagggcgtgggtgacgttggccattcggtgctgaaggaacggcac
atcctgggcggcgagggcatggtcatcgtggtgctggtggtggacgacaccggctgggaa
gtgctgcacggcccggaaatgctttccaagggcttcgtgttcgaacagcactacaaccac
gtgctcgaagacgccaagtgcatcgtgctggacatcttcgagaacatcccccccggcgag
acggaacggctgcaggaccgcatccgctcgtcgctgcggcggttcttccgcaaggtgctg
gagcgcgaccccatcgtggtgcccgtcatcaccaccatctga

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