Nitratidesulfovibrio liaohensis: KPS_003371
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Entry
KPS_003371 CDS
T09362
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
clih
Nitratidesulfovibrio liaohensis
Pathway
clih03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
clih00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KPS_003371
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clih03019
]
KPS_003371
Messenger RNA biogenesis [BR:
clih03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KPS_003371
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B_2
Lactamase_B
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
WMW65257
UniProt:
A0ABY9R235
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All DBs
Position
complement(3955893..3957554)
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AA seq
553 aa
AA seq
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MADQTPHLTITPLGGLGEIGLNCQIWSTPDSMVLVDCGLMFPEDYHLGVDVVIPRFDHVL
QNRHRVRGIVLTHAHEDHIGALPWLMPHLKAPIYGSRFTLALVEHKLREHGLADRVELVP
VSPDAPLVLGDMTFRFLPVCHSIIEGYALAVETPAGRVVHTGDFKIDPNPLSGPGTDLAL
FRDFAGEEGVRLLLSDSTNIERDGQSLGEREIMDTFRQLFQEAEGRIVVTLFSSHIQRIQ
EVFDLASEFGRKVVVSGRSLMNNIEIARNLGFLRAEAGMILDAVTMPPMADRDLVLLVTG
SQGEPLSALSRIIMGEHKQLCIHRGDTVVMSSRFIPGNARAITKLINELYRLGAEVYYDK
VRSIHASGHAHRDELRAMIEAVRPRYFVPVHGEYRHLVKHCRLAQECGVAQERTIILENG
DPITLTPDSVRFEEHVPVEFILVDGKGVGDVGHSVLKERHILGGEGMVIVVLVVDDTGWE
VLHGPEMLSKGFVFEQHYNHVLEDAKCIVLDIFENIPPGETERLQDRIRSSLRRFFRKVL
ERDPIVVPVITTI
NT seq
1662 nt
NT seq
+upstream
nt +downstream
nt
atggcggaccagaccccgcacctgaccatcaccccccttggcggactcggagagatcggc
ctgaactgccagatctggtccacgccagactccatggtcctggtggactgcggcctgatg
ttccccgaagactaccaccttggcgtggacgtggttattccgcgcttcgaccacgtgttg
cagaaccgccaccgggtgcgcggcatcgtgctgacccacgcgcacgaggaccacataggc
gcgctgccgtggctgatgccccacctgaaggctcccatctacggctcgcgcttcaccctg
gcccttgtggaacacaagctgcgcgaacacggcctggccgaccgtgtggaactggtgccc
gtctcgcccgatgcgccgctggtgctcggcgacatgaccttccgctttctgccggtgtgc
cattccatcatcgaagggtacgccctggccgtggaaaccccggcgggacgcgtggtgcac
accggcgactttaagatcgaccccaatcccctgtccggccccggcacagaccttgcgctg
ttccgcgactttgccggtgaagagggcgtgcgcctgctgctgtccgactccaccaacatc
gagcgtgacggccagtcgctgggcgaacgcgagatcatggacaccttccgccagctcttt
caggaggcggaagggcgcatcgtggtcacgctgttctccagccatatccagcgcatccag
gaagtgttcgacctggccagcgaattcggacgcaaggtggtggtcagcggccgcagcctg
atgaacaacattgagatagcgcgcaacctgggctttctgcgggcagaggcgggcatgatc
ctggacgccgtgaccatgccccccatggccgaccgcgacctggtgctgctggtcaccggc
tcgcagggcgagccgctgtcggccctttcgcgcatcatcatgggcgagcacaagcagctg
tgcatccaccggggcgacactgtggtcatgtcctcgcgcttcatccccggcaacgcgcgg
gccatcaccaagctgatcaacgaactgtaccggctgggcgcggaagtatactatgacaag
gtgcgctccatccacgcatcgggccacgcccaccgcgacgaattgcgcgccatgatcgag
gcggtgcgcccccgctacttcgtgccggtgcacggcgaataccgccatctggtcaagcac
tgccgcctggcgcaggaatgcggcgtggcgcaggaacgcaccatcatccttgaaaacggc
gaccccatcaccctcactccggacagcgtgcgtttcgaagagcacgtgccggtggaattc
attctggtggacggcaagggcgtgggtgacgttggccattcggtgctgaaggaacggcac
atcctgggcggcgagggcatggtcatcgtggtgctggtggtggacgacaccggctgggaa
gtgctgcacggcccggaaatgctttccaagggcttcgtgttcgaacagcactacaaccac
gtgctcgaagacgccaagtgcatcgtgctggacatcttcgagaacatcccccccggcgag
acggaacggctgcaggaccgcatccgctcgtcgctgcggcggttcttccgcaaggtgctg
gagcgcgaccccatcgtggtgcccgtcatcaccaccatctga
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