Clostridium ljungdahlii: CLJU_c03240
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Entry
CLJU_c03240 CDS
T01276
Symbol
dnaE
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
clj
Clostridium ljungdahlii
Pathway
clj03030
DNA replication
clj03430
Mismatch repair
clj03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
clj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CLJU_c03240 (dnaE)
03430 Mismatch repair
CLJU_c03240 (dnaE)
03440 Homologous recombination
CLJU_c03240 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
clj03032
]
CLJU_c03240 (dnaE)
03400 DNA repair and recombination proteins [BR:
clj03400
]
CLJU_c03240 (dnaE)
Enzymes [BR:
clj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
CLJU_c03240 (dnaE)
DNA replication proteins [BR:
clj03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
CLJU_c03240 (dnaE)
DNA repair and recombination proteins [BR:
clj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
CLJU_c03240 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
ADK13406
UniProt:
D8GLL0
LinkDB
All DBs
Position
332928..336404
Genome browser
AA seq
1158 aa
AA seq
DB search
MDKGKHRWVSLHQHTEYSLLDSSAKIPELIARAKELGMDSMAITDHGVMYGCVEFYKEAR
AQGIKPIIGCEIYVSQGDMTIKQNNGKNENYHLVLLVKNEEGYQNLMKIVSTASIKGFYY
KPRVDHNYLKNHSEGLIALSACMSGEVQSNILKGNIDKAEETALFYKSAFKDGFYLEIQY
HGIEAQLKINEQLISMSKKLNIPLVATNDVHYIKKEDYRAHDILLCIQTGKTVDEENRMR
YPSDEFYLKSPDEMYDMFSNVPESLENTIKIADQCNFDYEFHKSKLPKFPLPEDTDPYEY
MKDLCYKGLYKRYNDVTDELKSRLEYELGIIKKMGYVDYFLIVWDFIRFARKNGIMTGPG
RGSGAGSIVAYTLEITKIDPIKYKLIFERFLNPERVSMPDIDSDFCYERRGEVIDYVVEK
YGKDSVSQIITFGTMAAKMCIRDVGRAMNYSYGEVDRIAKMIPSIPNITIDKALDMNPEF
KEAYDSESRTKELIDIARALEGLPRHTSTHAAGVVIASEPLVNYVPLQKNEDNIVTQFTM
NTLEELGLLKMDFLGLRTLTVLRDAVEMIKEDKGIEIDLDTIDYDDKAVYNMIGEGKTVG
VFQLESPGFSSFMKELKPDSLEDIIAGISLYRPGPMSEIPKYIKNKNNPEGIEYVTPQLE
HILSVTYGCMVYQEQVMQIVRDLAGYSMGRSDLVRRAMSKKKHHVMEEERHNFVYGIVDE
KGEIQVPGCVRNGISEKIANDIFDSMMDFASYAFNKSHAAAYAVVAFRTAYLMYYYPTEF
TAAMLNSVKGDSEKVAYYIRFAKSIGIEIMPPSINESCTKFTVEDGNIRFGLSAIKNVGE
NVIDSIVRSRSKHGKFKDIVDFCNSIDLDSINKRVVESLIKAGAFDCFGVLRSQLIAVHE
KVIDSVINSRKKNIEGQVSLFSQIEDSSVRIKYPSIEEFKKLDMLAMEKEMTGLYLSGHP
LDEYARTLELQADTKISDIVGRKTLEDNFVEEAKVNDGDRVIVGGILSEVSKKITKNNDM
MAFAKLEDLYGIMEIIVFPKVFQRVRSLIEDDYMIIAKGRVSVREDEQPKLLCEVIEPLV
RIDTEKLYILIEDQDILKEALERIRPVFVNFKGNIPVYLCTKKERKKFRLDRELWIKSDL
ELMSFLRKSFGDNNVKII
NT seq
3477 nt
NT seq
+upstream
nt +downstream
nt
atggacaaaggaaaacatagatgggttagcttacaccaacatacggaatattccctcctg
gattcttcagctaaaattccagaacttatagccagagcaaaagaactgggaatggatagt
atggcaataacagaccatggtgttatgtacggatgtgtggaattttataaagaagcaagg
gcacagggaatcaagcctataataggctgcgaaatatatgtatctcagggagatatgact
ataaagcaaaacaatggcaaaaatgaaaactaccatctggtgcttttggtgaaaaatgaa
gaaggatatcagaatttaatgaaaatagtatctacagcttctataaaaggattttactat
aaaccaagggtagaccataattatttgaaaaatcatagtgaagggctaatagcactaagt
gcttgtatgagtggtgaagttcaatccaatatattaaaaggaaatatagataaagctgaa
gagacagctttgttttataaaagtgcttttaaagatggtttttatttggaaattcaatat
catggtatagaggctcagctcaagataaatgaacagttgatttctatgtctaaaaaatta
aacatacctttagttgccacaaatgatgttcattatataaaaaaggaagattacagggct
catgatattttgctttgtatacaaactggcaaaactgtagatgaagaaaatagaatgaga
tatccttcagatgaattttatctaaagtcgccagatgagatgtatgatatgttttccaat
gtgccggagtctctagagaatacgattaaaatagcagatcaatgtaattttgactatgag
tttcataaatcaaagcttcctaaattccctctaccggaagacacagatccttatgagtac
atgaaggatttatgctataagggactttataaaagatataatgatgtaacagatgaattg
aaaagtaggctggaatatgagctaggcataataaagaaaatgggttatgttgactatttt
cttatagtatgggattttatacgatttgcgagaaaaaatgggataatgacaggacctgga
cgaggaagtggagcaggttctatagttgcctatacacttgaaataactaaaatagatcct
ataaaatataagcttatatttgaacgtttcctaaatcctgaaagagtttctatgccggat
attgacagtgatttttgttatgaaaggcgtggagaagtaatagattatgtggtagaaaag
tatggaaaagacagtgtgtctcaaattataacttttggaaccatggcagccaagatgtgt
ataagagatgtaggcagagcgatgaattacagttatggggaagtagatagaatagccaaa
atgataccttcaattcccaatataactatagataaagcacttgacatgaatcctgagttt
aaagaagcttatgacagtgaatcaagaactaaagaacttatagatattgctagagcactt
gaagggcttccaaggcatacctctacccatgcggcaggagttgttatagcttcagaacct
cttgtaaattatgtgccacttcaaaaaaatgaagataatatagttacacaatttactatg
aatactctggaggagctaggacttctcaaaatggactttttaggattgcgtacgttgact
gttttaagagatgctgttgaaatgattaaagaggataagggtatagaaattgatttagat
actatagattatgatgataaagctgtttacaatatgataggtgaaggaaaaactgtaggg
gtatttcaacttgaatcacctggttttagttcttttatgaaggaactaaaaccagattct
ctggaggatataatagcaggaataagtctttatagaccaggacctatgtcagaaataccc
aaatatattaaaaacaaaaataaccctgagggaatagaatatgtaacccctcagcttgaa
cacattctttctgttacttatggatgcatggtataccaggagcaggtaatgcaaattgta
agagatttagcaggatattccatgggccgaagtgatctggtgagacgtgctatgtcaaaa
aagaaacaccatgttatggaggaagagagacataattttgtatatggaattgtagatgaa
aaaggtgaaatacaggtaccaggctgtgtgcgcaatggtatatctgaaaaaatagccaat
gacatatttgattctatgatggattttgcatcctatgcatttaacaaatcccatgctgca
gcctatgctgtagtggcgtttagaacagcgtatttaatgtattattatcctactgagttt
acagcagctatgttaaatagtgtaaaaggagacagtgaaaaagtagcctattatataagg
tttgccaaaagtattggaatagaaataatgcctccaagtattaatgaaagttgtacaaag
tttacagtagaagatgggaatataagatttgggttgtctgctataaaaaatgtaggtgag
aatgtaatagatagtatagtcagatcacggtccaaacatggtaagtttaaagatatagtg
gatttttgtaatagtatagacttggattccataaacaaaagggtagtagagagtttaatt
aaagcaggcgcctttgactgttttggagtgctgagatctcaacttatagcagtacatgaa
aaagtaattgacagtgttataaattctagaaaaaagaatatagaaggacaggtgagccta
ttttctcaaattgaagatagtagtgtaagaataaaatatccttctatagaagaatttaaa
aagctagatatgctggctatggaaaaggaaatgactggattatatctttcaggacatccg
ctggatgaatatgcaagaacattagaattgcaggcagatactaaaatatctgacatagta
ggtaggaaaactttagaagataattttgtagaggaagctaaagtaaatgatggtgataga
gttatagttggtggaatactttccgaagtatctaaaaaaattactaaaaataatgatatg
atggcttttgcaaagttagaagatctttatggaattatggagataatagtatttccaaaa
gtatttcagagagttagaagtctaattgaagatgattatatgattatagcaaagggtaga
gtaagcgtaagggaagatgaacagcctaagcttctctgcgaagttatagagcctctggtg
agaatagatacagaaaaactttatattttgattgaagatcaagatattttaaaggaagct
ttagagagaattagacctgtatttgtaaactttaaaggaaatattcccgtatatttgtgt
acaaaaaaggaaagaaaaaagtttaggttggatagggaattatggataaaatctgatttg
gaacttatgtcttttctaagaaaaagctttggagataataatgtaaaaattatatag
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