Clostridium ljungdahlii: CLJU_c04110
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Entry
CLJU_c04110 CDS
T01276
Name
(GenBank) predicted ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
clj
Clostridium ljungdahlii
Pathway
clj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
clj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CLJU_c04110
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clj03019
]
CLJU_c04110
03009 Ribosome biogenesis [BR:
clj03009
]
CLJU_c04110
Enzymes [BR:
clj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CLJU_c04110
Messenger RNA biogenesis [BR:
clj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CLJU_c04110
Ribosome biogenesis [BR:
clj03009
]
Prokaryotic type
rRNA helicases
CLJU_c04110
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_19
CMS1
SWI2_SNF2
AAA_30
Terminase_6N
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
ADK13493
UniProt:
D8GLU7
LinkDB
All DBs
Position
complement(430497..431987)
Genome browser
AA seq
496 aa
AA seq
DB search
MISIVNIKVYEVKKIMDKLEFKDFALSEDILKSIEKLGYKNPSQVQEKVIPLIFKNKDII
VKSQTGSGKTAAFAIPICEKIELEEKNPQVLVLAPTRELALQIKEDFYDIGRFKRINCTA
IFGKEPITTQIKELKQRTHVIVGTPGRTLDHIEKDTLSLKKIQYLIIDEADEMLNMGFID
QVKAVLDKLPKNRVTLLFSATIPQEILKLCAAYMNNPINVEIDAEDPVINRINQIYYQIE
AYKKFDLLNKLVYTQRPESSMIFCRTKKNVEDLVLQMKGKGYSCSGLHGGMLQSERIDVM
KRFKRGEFIFLVCTDVAARGIDVENITHIINYDIPMEKESYVHRIGRTGRAGKSGTAITF
VTPKEYRFLEEIEKFFNLTIEKGTIPSKEEVEKGKDIYKEKLKAAPKIKKDKSTKLNKDI
TKIYISAGKKKKIRPGDIAGTISSIDGINPEDVGIIEIQDNFSYVDILSGKGHIVLDGLK
HKTIKGKSVRVEIAQK
NT seq
1491 nt
NT seq
+upstream
nt +downstream
nt
atgataagtattgttaatataaaagtatacgaggtaaaaaaaattatggataaactagaa
tttaaagatttcgcattaagcgaagatatattaaagtcaatagaaaaattgggatataaa
aatccgtctcaggttcaagaaaaagtaataccacttatttttaaaaacaaggatattata
gtaaagtcacaaaccggcagcggaaaaacagcagctttcgccataccaatctgtgaaaaa
atagaacttgaagaaaaaaatccccaggtattagtacttgctcctacaagagaacttgca
ctgcaaataaaagaagatttttacgatataggaagatttaagagaataaattgtactgca
atctttggaaaagagcctataacaactcagataaaagaacttaaacaaagaactcacgta
atagttggaacaccaggaagaacactagatcatatagaaaaagatactctttccctgaag
aaaatacaatatttgatcatagatgaagcagatgaaatgctaaatatgggatttatagac
caagttaaggctgttctagataagctgcctaaaaatagagtaactctccttttttctgca
accattccccaggaaatacttaaattatgtgctgcatatatgaataatcctattaatgta
gaaatagacgccgaagatcccgtaataaatagaatcaatcaaatatattatcagatagag
gcatataaaaaattcgatttgttaaataagctagtatatactcaaaggccagaaagttct
atgatattttgcagaacaaagaagaatgtagaagaccttgtgcttcaaatgaaaggtaaa
ggttattcctgcagtggtcttcacggaggaatgcttcaatccgaaagaattgatgttatg
aaaagatttaaacgaggagaatttattttccttgtatgcacggatgttgcagcccgtggg
atagatgtagaaaatataactcatatcataaactatgatattcctatggaaaaagaaagt
tatgttcatagaataggaagaaccggtcgtgccgggaaaagtggaactgccataactttt
gttacacctaaagaatatagatttctagaagaaatagaaaaattcttcaatcttactatt
gaaaaaggtacaattccatcaaaagaagaagtagaaaaaggtaaggatatatacaaggaa
aaattaaaagctgctcctaagataaaaaaagataaatccactaaactaaataaagacatc
acaaaaatatatataagtgcaggtaaaaagaaaaaaataagaccaggagatattgctgga
actatatcaagtatcgatggtattaatcctgaggacgttggcataatagaaattcaagat
aacttttcttacgttgatatactatctgggaaaggccatatagttctcgatgggcttaaa
cacaaaaccatcaaggggaaatctgtaagagtagaaatagctcaaaaatag
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