Clostridium ljungdahlii: CLJU_c13000
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Entry
CLJU_c13000 CDS
T01276
Symbol
topA1
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
clj
Clostridium ljungdahlii
Brite
KEGG Orthology (KO) [BR:
clj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
clj03032
]
CLJU_c13000 (topA1)
03400 DNA repair and recombination proteins [BR:
clj03400
]
CLJU_c13000 (topA1)
Enzymes [BR:
clj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
CLJU_c13000 (topA1)
DNA replication proteins [BR:
clj03032
]
Prokaryotic type
DNA Topoisomerases
CLJU_c13000 (topA1)
DNA repair and recombination proteins [BR:
clj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
CLJU_c13000 (topA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Zn_ribbon_recom
Toprim_4
Zn_ribbon_GRF
HVO_2753_ZBP
Motif
Other DBs
NCBI-ProteinID:
ADK14368
UniProt:
D8GS15
LinkDB
All DBs
Position
1397670..1399778
Genome browser
AA seq
702 aa
AA seq
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MGQKLVIVESPAKAKTIGKYLGKNYVVKASMGHVRDLPKSQLGVDIDNEYTPKYITIRGK
GELLDKLRKEAKKSEKVYLATDPDREGEAISWHLSHALKLDENEKCRIEFHEITKNAVKS
SIKSARLININLVNAQQARRVLDRLVGYKISPILWRKIKWGLSAGRVQSVALKMICEREK
KIVDFVPQEYWTIECELHKENESKCFNVKLTTFNKKKIEIGSKDEVDKIIEELKQGQFIV
KSIKNTNKNRTPLPPFTTSTLQQDAYKKLNFSTKRTMSIAQQIYEGVDIKGYGTIGLITY
MRTDSVRIAQEAQEACRDFVANKFGKEYIEEKPRNFKSKKNIQDAHEAIRPTNVEITPEI
AKENLKPEQYKLYNLIWNRFVASQMSSCQIDVKSIDIVNSNYGLKVSGSRIKFDGFMKVY
KYATEEEKSDISLPKLEEGEKLLRKSIDGKQHFTQPPARFSEASLVKTLEENGIGRPSTY
APILSTLLDRKYIQREKKTLIPTELGDIVNNIVSQYFKQVVDVEFTAAMESKLDSVEDGK
DDWRKVVGEFYEPLKKSIEIAEKEVARITIEDKVTDIKCDKCGRNMVIKHGRFGDFLACP
GYPECKNTKPIVEELDVKCPKCQGKVLIKRSRKGRKFYGCSNYPDCDFVSWFEPTNEKCK
ECGNYMVKKYNKSKGNYLECSNSECKHREYKAVEDGDEKTAK
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
atgggacaaaaattagttatagttgaatcaccagcaaaggctaaaaccataggaaaatat
ttaggtaaaaattatgtagtcaaggcttcaatgggccatgttagggatcttcccaaaagt
caactgggagttgatatagataatgaatatactcctaaatatataactataagaggaaaa
ggtgagcttttagataagctgagaaaagaagcaaagaaaagtgaaaaagtctatttggct
actgaccctgatagagaaggggaagctatttcctggcatctatctcatgcgttaaaatta
gatgaaaatgaaaagtgtagaatagaatttcacgaaattacaaaaaatgctgtaaaaagt
tcaataaaatctgctagattaataaatataaatttagttaatgcacagcaggctaggaga
gtacttgacaggctagttggatacaagataagccctatactttggagaaaaattaaatgg
ggtctaagtgcaggaagagtacaatcagtagctctcaaaatgatatgtgagagagaaaag
aaaatagtagattttgtgccacaggaatactggactatagaatgtgaacttcataaagaa
aatgagagtaaatgttttaatgtaaagcttactacatttaataagaaaaaaattgaaatt
ggtagtaaagatgaagtagataaaattatagaagagttaaaacaaggacaatttattgta
aaatcaataaaaaatactaataaaaataggactcctcttcctccatttactacaagtaca
ttacagcaagatgcctacaaaaaattaaatttttctactaaacgaactatgtccatagcc
caacagatatatgaaggagtggacataaaagggtatggaactataggtcttatcacatat
atgagaactgattcagttagaatagcacaagaggctcaggaagcttgtagagattttgta
gcaaataaatttggaaaggagtatattgaagaaaagcctagaaactttaaaagtaaaaaa
aatatacaggatgcgcatgaagctataagacctactaatgtagaaataacacctgaaata
gcaaaggaaaatttaaaaccagaacagtataaactttataatttaatatggaatagattt
gtagcaagtcaaatgtcatcctgccagatcgatgttaaatccatagatatagtgaatagc
aattatggattaaaagtcagtggatcacgaataaaatttgacggatttatgaaagtatac
aaatatgccacagaagaagaaaaatccgatatatccctccctaagcttgaagaaggagag
aaattattaagaaagtctatagatggaaagcagcattttacacaacctccagctagattt
tctgaggcatctcttgtaaaaaccttagaagaaaatggaataggtaggcctagcacttat
gctccaattttatcaactcttttggatagaaaatatatacagagggaaaagaaaacttta
attccaactgaactaggagatatagttaataatatagtaagtcagtattttaagcaggta
gtagatgtggaatttactgctgcaatggagtccaagttagatagtgttgaagatggaaaa
gatgattggagaaaagtagtaggtgaattttatgagcctttaaaaaaatccattgaaata
gcagaaaaggaagttgctagaattactatagaagataaggttacagatataaagtgcgat
aaatgtggtagaaatatggttataaagcatggaagatttggagattttctagcatgccca
ggatatccggaatgtaagaatacaaaaccaatagtggaagagttggatgtaaaatgtcct
aaatgtcagggaaaagttttgataaaaagaagtagaaaaggcagaaagttttatgggtgc
agtaattaccctgactgtgattttgtaagttggtttgaacctacaaatgaaaagtgtaag
gaatgtggaaattatatggtgaaaaaatataataaatccaaaggaaattatttggaatgt
tctaattcagaatgtaaacacagggaatataaagctgtggaagatggagatgaaaaaaca
gctaagtaa
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