Clostridium ljungdahlii: CLJU_c13290
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Entry
CLJU_c13290 CDS
T01276
Name
(GenBank) conserved hypothetical protein
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
clj
Clostridium ljungdahlii
Pathway
clj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
clj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CLJU_c13290
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clj03019
]
CLJU_c13290
Messenger RNA biogenesis [BR:
clj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CLJU_c13290
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_PNO1_2nd
KH_KhpA-B
MYCBPAP
KH_NusA_2nd
KH_2
Motif
Other DBs
NCBI-ProteinID:
ADK14397
UniProt:
D8GS44
LinkDB
All DBs
Position
1428651..1430195
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AA seq
514 aa
AA seq
DB search
MNSIIIYEVIAGILVAAALIVQFNMIKKKAVVIKSQALEESNRLKEEAKKQAETQKKEAI
LEAKEEIHKLRNDFDKESRDRRNENQRLERRLIQREELLDKKSDALEKRDSGLDKKQQDI
DKLQISVEELYKKQREKLEKLSGLSSEEAKNILLEQVNKEIKHESAMMIKEIETKAKEEA
DKKAREIITCAIQRCAADHVAETTVHVVPLPNDEMKGRIIGREGRNIRTLETLTGVDLII
DDTPEAVILSGFDPIRREVARIALEKLIIDGRIHPARIEEMVQKAEKEVENNVKEEGEQA
TFETGVHGLHMELVKLLGRLKYRTSYGQNVLKHSVEVAYLAGLMASEIGIDPTIAKRAGL
LHDIGKAVDHEVEGPHAVIGSEVAKKYRESPIIVNAIAAHHGDVEFQSLEAVLVQAADAI
SAARPGARRETLEAYIKRLEKLEEIANTCEGVEKSYAIQAGRELRIMVKPENIDDAGAIE
MARNIVKRIEEELEYPGQIKVNVIRETRAIEYAK
NT seq
1545 nt
NT seq
+upstream
nt +downstream
nt
gtgaattccataataatatatgaggttattgctggtatactagtagcagctgccttgata
gttcaattcaatatgatcaaaaagaaggcagttgttataaaatcacaggctttagaagag
tctaatagattaaaggaagaggcaaaaaaacaggctgaaacccaaaaaaaagaggctata
ctagaagctaaagaggaaattcataaattaagaaatgattttgataaagagtctagagat
agaagaaatgaaaatcaaagacttgaaagaaggttaatccagagagaagagttattagat
aagaaaagtgatgctcttgaaaagagagatagtggcctagataaaaagcagcaggacata
gataaattacagataagtgtagaggaattatataagaaacaaagagaaaaattagaaaag
ttatcaggactaagttctgaagaggctaagaatattttactagaacaagttaataaggaa
ataaaacatgaatctgcgatgatgattaaagaaattgaaacaaaggctaaagaagaagct
gataaaaaagcaagagaaattataacttgtgctatccagaggtgtgctgctgatcatgta
gcagaaactacagtacatgttgtacctttacctaatgacgaaatgaaaggcagaataata
ggtagagagggtagaaatataaggactcttgaaacattaactggtgtggatctaataata
gatgatacacctgaagctgtaatattgtcgggctttgatcctataaggagagaggttgca
agaatagcactggagaaacttataattgatggaagaatacacccagcaagaatcgaagaa
atggttcaaaaagctgaaaaagaagttgaaaataatgttaaagaagaaggagaacaggcc
acttttgaaactggcgtgcacggccttcatatggaattagtaaaattgttaggaagattg
aagtatagaaccagctatggtcaaaatgttttaaaacattctgtggaagttgcctattta
gctggacttatggcatcagaaattggcatagatccaactatagctaaaagagcaggattg
cttcatgatataggtaaagcagtggatcatgaagttgaaggtcctcatgccgttataggt
tcagaggttgctaaaaaatacagagaatcaccaataattgtaaatgctattgcagctcat
catggagatgtagaatttcaatccttagaagctgtactcgttcaagcagcggatgctatt
tctgctgcaaggcctggtgctagaagagaaacactggaagcttatattaagcgtctagaa
aaacttgaagaaatagcaaatacatgtgaaggtgtagaaaagtcatatgccattcaagcg
ggaagagaacttagaataatggttaaaccagaaaatattgatgatgcaggtgctattgaa
atggcaaggaacatagtaaagagaattgaagaagagctagagtatcctggtcagattaaa
gtaaatgtcattagagagactcgtgcaattgaatatgcaaaataa
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