Clostridium ljungdahlii: CLJU_c16530
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Entry
CLJU_c16530 CDS
T01276
Name
(GenBank) predicted ATP-dependent DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
clj
Clostridium ljungdahlii
Pathway
clj03420
Nucleotide excision repair
clj03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
clj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CLJU_c16530
03430 Mismatch repair
CLJU_c16530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
clj03400
]
CLJU_c16530
Enzymes [BR:
clj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CLJU_c16530
DNA repair and recombination proteins [BR:
clj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CLJU_c16530
MMR (mismatch excision repair)
Other MMR factors
CLJU_c16530
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
Viral_helicase1
CarD_TRCF_RID
ChuX_HutX
Motif
Other DBs
NCBI-ProteinID:
ADK14717
UniProt:
D8GU54
LinkDB
All DBs
Position
1796824..1799037
Genome browser
AA seq
737 aa
AA seq
DB search
MNLEVLKTEFKYLRDKIIEKQYEHLDPMQRKAVLNGENNCIVIACPGAGKTQTIINRVDY
LCRFGPIYNTDYVPNCLKTDDLQIMKKYLNDNSFKDVTAVNKIEHLLNSNKINPQNIVVI
TFTRAAALNMKNRYISIGNKEKSPFFGTFHSLFYNILKKHNKEINIIDPYKAHEIVKNTL
MYYLDFIGEERVKEVLNDISLLKNSETNIDLFKSKIDKSVFLKCFNEYENYKARNKLMDF
DDLQLKVKDMFLNQKSILDSYQNLFKYILVDEFQDSDNLQIELLQLIGSKGVIFAVGDED
QCIYSFRGSKPECMVNFDNYFKDGRKIYLKINYRSVKNVVELSKKIICNNKNRNVKLIEN
NRKNDGNIYFKVFEREKEQAFFVSNSIKEIINKGKYKYSHIAVFYRTNLESRSIIDAFLK
YNIKFKLLDGQYNFYEHFICKDLIAYLKLAVNMCDKNSFMRIINKPFRYIGKVNIKKVID
NRIRENCFDILRQVGDLPIFQLKNITVLEKNIRKLNRMKKQDRINYILDKLDYMDYLKNY
CMKLNRDMDELQDIIGEFREACGEFDSIESFLDNVGKVEQTLEKGKKEGNTVTLSTIHGV
KGMEFENVFIINCSEGLIPHANSIQNNLEEERRLFYVGVTRAIDNLTLCYSSTIRKKAVN
VSRFIEECDLLNSGELMKNCDLEIGDYVVHKVFGSGKIIDKRDNCLKVLFSGNREIGFDL
SVLYNGQLMKDAARKCL
NT seq
2214 nt
NT seq
+upstream
nt +downstream
nt
atgaatctggaagtgttaaaaacagagtttaagtatttaagagataaaataattgaaaag
caatatgaacatcttgatcctatgcaaagaaaagcagttttaaatggtgaaaataactgt
attgttattgcttgtcctggagcaggaaagacccagactattattaatagagtggactac
ttatgtagattcggtcctatatacaatacagattatgtacctaattgtctaaagaccgat
gatttacagataatgaagaaatatttaaatgataattcttttaaagatgtgactgcagta
aataaaattgagcatttgttaaatagcaataaaataaatccacagaacatagttgttata
acttttactagagcagctgctctcaatatgaaaaacagatacatatctataggaaataaa
gaaaagtcacctttttttggaacattccactccctattttataatatattgaaaaagcat
aataaagaaataaatattatagatccttataaggcacatgagatagttaaaaatacactt
atgtattatctggactttataggagaagagagagtaaaggaagttctaaatgacatatct
cttttaaaaaatagtgaaactaacatagatttatttaaaagtaaaattgacaaaagtgta
tttttaaaatgttttaatgaatatgaaaattataaagctagaaataagcttatggatttt
gatgatttacaattaaaagttaaagatatgtttctaaatcagaaatctattctagatagt
tatcagaatttgttcaagtatattttagttgatgagtttcaggattcagataacctccaa
atagagcttttacaactaataggaagtaagggggttatatttgcagtaggagatgaggat
caatgcatatattcttttaggggatctaagccagagtgcatggtgaattttgataactat
tttaaagatggaagaaaaatttatttaaaaataaattacagaagtgttaaaaatgtagtt
gaattgtccaaaaagattatatgtaataataaaaatagaaatgtaaaacttattgaaaat
aacagaaaaaatgatggaaatatatacttcaaggtatttgaaagagaaaaagagcaggcc
ttttttgtatcaaattcaatcaaagaaattataaataagggaaaatacaaatatagtcac
atagctgtattttatagaacaaacctggaatcaagaagtataatagatgcttttttaaaa
tacaatataaagtttaaacttttggacggtcagtataatttttatgaacattttatatgc
aaggatttaatagcatatcttaaattggctgtaaatatgtgcgataagaatagttttatg
agaataataaataagccttttaggtatattggaaaagtaaatataaaaaaagttatagat
aatagaataagggaaaattgctttgatattttaaggcaagtaggtgatttacctattttt
cagcttaaaaacataactgtgcttgaaaaaaatattagaaaattaaatagaatgaagaag
caggatagaataaattatatattggataaattagattatatggattatttaaaaaattac
tgcatgaaattaaatagggatatggatgaacttcaagatattataggagagtttagggaa
gcttgcggagaattcgatagtatagaatcatttttggataatgttggaaaagtggagcag
actttagagaaaggtaagaaagaaggtaatacagttactttaagtactattcacggcgtg
aaaggtatggagtttgagaatgtgtttataataaactgcagcgaagggttaattccccat
gcaaatagcatacaaaataatctggaagaagaaaggcggcttttttatgtaggggttaca
agagccatagataatttgactttatgttattcaagtactattaggaaaaaggcagtaaat
gtatccaggtttatagaagaatgtgacttgttaaattcgggagagcttatgaaaaattgc
gatttagaaataggggattatgtagttcacaaagtatttggaagtggaaaaataatagat
aagagagataattgcttaaaagtattattttcaggtaatagagagataggatttgattta
tcggttctttataatggacagctgatgaaggatgctgccagaaaatgtttgtaa
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