Clostridium ljungdahlii: CLJU_c20320
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Entry
CLJU_c20320 CDS
T01276
Symbol
sbcCD
Name
(GenBank) predicted nuclease sbcCD, subunit C
KO
K03546
DNA repair protein SbcC/Rad50
Organism
clj
Clostridium ljungdahlii
Brite
KEGG Orthology (KO) [BR:
clj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
clj03400
]
CLJU_c20320 (sbcCD)
DNA repair and recombination proteins [BR:
clj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
CLJU_c20320 (sbcCD)
Archaeal homologous recombinant proteins
CLJU_c20320 (sbcCD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
AAA_29
AAA_27
SMC_N
ABC_tran
MinC_N
Motif
Other DBs
NCBI-ProteinID:
ADK15094
UniProt:
D8GJ19
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All DBs
Position
2207647..2211141
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AA seq
1164 aa
AA seq
DB search
MKPIRLKIKGLNSFIESQCIDFGKLTQRGLFGIFGPTGSGKSTILDGMTLALYGETSRKS
SNYININCNTLSVSFEFQISGRNIKKYRVEREFKRDNKTGSPRSKLAKIVDVTDDVEKIL
EEGARNVTEKCEDIIGLRLEDFTRTVVLPQGKFNEFLRLEGKDRRNMLERLFNLQEYGYE
LSEKLSKKIGREKNKANLIEGELKGYENINEKVLEEKKNTLCELNKNYDKCQSELVDSQN
KFNDGKELWNLQEELKRQVIEQEKFKKNEVYINEIQQKVLLGESAAKVKPYIDEYENTIS
KIKSIEKELLILNDTMKSIKNNKDEIENKLENAKNKRNNELPNLKIKEQKAIEAIEEKSV
LNILLHDKEKLEKNIAVLKQDLQTNGRNIEKSEVDISRINCQIKDSENKMQALKIPEEYK
KKINEGIVILNNLESIGEQKKSAVRDIESLKSNIETEEKKSEILAKKNNEKSNLLEDNNK
LLNNLIENCPGDQNSLLTLQKNLTDARDKWSKYYEYEGDLRSSTTLIEKLKIELQDKKSE
KGNLENEIEEIDKKVKKIETENLAHTLRKSLVEGEPCPVCGSVHHVVENVIILDSSNLKE
LKLDLDAKIQRSNKLNNEIVKIDTNIKVQKENTADRQKKIKELGENFKAFPLKDVESKFN
NLKKAVDEFNNKKITLENKIKILNQDKNVIEIEYSKSVTRKVENSSQLQKLQESFQKIDQ
KCAKVNSEYELLKQELGICNFKEKNEEILEKEKSRTLLENIIKNLRKDLEIEQRKKESLN
EKLMTLRTQLSKNSATFVEKNKSIVEKENSIKDKACGREDLENLKREILGNIKKIEYEYE
ETEKNSKKIEKQYNECSSSIIAAQKNLVSLNERCADDLENLRKALSEEKIENIVEAKNNY
MSKDKIEELNIKIEQYRNASVKIIGTIENLNTKIGDRSLSEDRWIEIQSTRDKNTETLEK
LKKDKIELEREVKDIDEKIGQLTKLLNKKQKLEYELSLLDDLDKLFKGKKFVEFVAQNQL
KYISIEADKRLKEITCGNYGLEVDKDGRFIIRDYKNGGAQRDASTLSGGETFVTSLALAL
ALSAQIQLKGSAPLELFFLDEGFGTLDDNLLEVVMDSLEKIHNDRLSIGIISHLESIKDR
MPVKLIVAPAEAGMGGSKVKIEIN
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
atgaagccaattagacttaaaataaaaggattaaatagttttatagaatcacaatgtata
gattttggaaaattaacccaaagaggtttgtttggaatatttggacctactggaagtgga
aaatcgaccatacttgatggcatgactctggccttatatggtgaaacatccagaaaaagt
tcaaattatattaatataaattgtaatactttaagtgttagttttgaattccagatatct
ggaagaaatataaaaaaatatagagttgagagagaatttaaaagagacaataaaacaggc
agccctagaagtaagttagctaaaatagtggatgttacagatgatgtggaaaagatatta
gaagaaggggctagaaatgtaactgaaaaatgtgaggatattattgggcttaggttagaa
gattttacaaggactgtagttttgccccaggggaaatttaatgaatttttaaggcttgag
ggaaaagacagaagaaatatgcttgaaagactttttaaccttcaagaatatggttatgag
ctttctgaaaaattgtcaaagaagattggcagggaaaaaaataaggcaaatttaattgaa
ggcgagttaaagggttatgaaaatataaatgagaaagttttggaagagaagaaaaataca
ctttgcgaattaaataaaaattatgataagtgtcaaagtgaactagttgattcgcaaaat
aaatttaatgatggaaaagaactgtggaatcttcaagaagagttaaaacgtcaagttata
gagcaggagaaatttaagaaaaatgaagtatacataaatgaaattcagcaaaaagtttta
ttaggggaaagtgcagcaaaagtaaaaccttatattgatgaatatgaaaatacgatctca
aaaattaaaagtatagaaaaagaacttttgattttaaatgatactatgaaatctataaaa
aataataaagatgaaatagaaaataaattagagaatgccaaaaataaaagaaataatgaa
ttgcctaatttaaaaataaaggaacaaaaggctattgaggcaatagaagaaaagtcagtt
ttgaatatattacttcatgataaagaaaaattagaaaaaaatattgcagttttgaaacaa
gatttgcaaactaacggtaggaatatagaaaaaagtgaggtagacattagtaggataaac
tgtcagataaaagatagtgaaaataaaatgcaggctttgaaaatcccagaagagtataag
aaaaagattaatgaaggcatagtgattttgaacaaccttgaaagtattggtgaacagaaa
aaaagtgcagttagggatatagaaagcttgaaatcaaatattgaaactgaagaaaagaaa
agtgaaatactagctaaaaaaaataatgaaaaatctaatttattagaagataataataag
ttattgaataatttaatagagaactgtcctggggatcaaaactcacttttaactttgcag
aaaaatttaacagatgcaagagacaaatggagtaaatattatgaatatgaaggtgatttg
cgcagcagcactactttaatagaaaagcttaaaattgagcttcaagacaagaaaagtgaa
aaaggtaatttggaaaatgaaattgaagaaatagataaaaaagtaaaaaagattgaaact
gaaaatttggcacatactttgaggaaatctttagtagaaggagagccctgtcctgtatgt
ggatcagttcatcatgttgtagaaaatgttataattttagattcaagtaatttgaaagag
ctaaaacttgatttggatgcaaaaattcaaagaagtaataaactaaataatgaaatagtg
aaaatagatacgaatattaaagtacaaaaagaaaacacagcagacagacagaaaaagata
aaagaattaggtgagaattttaaagcatttcctttaaaagatgttgaaagtaagtttaat
aatttaaagaaagctgtggatgaattcaataataaaaaaataactctggaaaataagatt
aaaattttaaatcaagataaaaatgtcatagaaattgaatacagtaaatcagttacgaga
aaggtagaaaacagttctcagcttcaaaagttacaggaaagttttcagaaaatagaccag
aagtgtgcaaaagtaaatagtgaatatgaattattaaaacaagaacttggtatctgtaat
tttaaagaaaagaatgaggaaatccttgaaaaggagaaaagtagaacattacttgaaaat
attataaaaaatctaagaaaagatttagaaattgagcaaagaaaaaaagagagtttaaat
gaaaaattaatgactttacggacacagttaagcaaaaacagtgctacctttgtagaaaaa
aataaaagcatagtggaaaaagaaaatagtataaaagataaagcctgtggtagggaagac
ttagaaaatttaaaaagagagatattaggtaacataaaaaaaatagagtatgaatatgag
gaaacagaaaaaaacagtaaaaaaatagaaaagcagtacaatgaatgcagcagcagcata
atagcagctcagaaaaatttagttagcttaaatgaaagatgtgcagatgacctggaaaat
ctaaggaaggccttatcagaagaaaaaattgaaaatatagttgaggctaaaaataactat
atgtctaaggataaaattgaggaacttaatattaaaatagaacaatatagaaatgcaagt
gttaaaataattggtactatagaaaaccttaatacaaaaataggtgacaggagtttaagt
gaagacagatggattgaaatacaaagtactagagataaaaatactgaaactttagaaaag
ttgaaaaaagacaaaatagagcttgaaagggaagtcaaggatatagacgaaaaaataggt
cagcttacaaaacttttaaataaaaaacagaaactagaatatgagttaagtcttttagat
gatctggataaactgttcaaagggaaaaagtttgtggaatttgtagcccagaatcagttg
aaatatatatccatagaagcagacaagaggctaaaggagattacttgtggaaattatgga
ttggaagttgataaggatggcagattcatcataagggattataaaaatggtggagcacaa
agagatgcatctactttatctgggggagagacttttgtaacatcactggcactagcacta
gcactatccgctcaaatacaattaaagggaagtgcgccgctagaactattcttcctggat
gaaggttttggaactcttgatgataacctcctggaagtggttatggattcactggagaaa
attcataatgataggctgtccataggtataataagtcatcttgaatcaattaaagatagg
atgcctgtaaagcttatagttgctcctgcagaggcaggaatgggtggaagtaaagttaaa
atagaaataaattaa
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