Clostridium ljungdahlii: CLJU_c30690
Help
Entry
CLJU_c30690 CDS
T01276
Symbol
polC
Name
(GenBank) DNA polymerase III
KO
K03763
DNA polymerase III subunit alpha, Gram-positive type [EC:
2.7.7.7
]
Organism
clj
Clostridium ljungdahlii
Pathway
clj03030
DNA replication
clj03430
Mismatch repair
clj03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
clj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CLJU_c30690 (polC)
03430 Mismatch repair
CLJU_c30690 (polC)
03440 Homologous recombination
CLJU_c30690 (polC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
clj03032
]
CLJU_c30690 (polC)
03400 DNA repair and recombination proteins [BR:
clj03400
]
CLJU_c30690 (polC)
Enzymes [BR:
clj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
CLJU_c30690 (polC)
DNA replication proteins [BR:
clj03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
CLJU_c30690 (polC)
DNA repair and recombination proteins [BR:
clj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
CLJU_c30690 (polC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
RNase_T
PHP
DNA_pol3_finger
DNA_pol3_a_NII
HHH_6
DNA_pol3_a_NI
tRNA_anti-codon
RNase_H_2
Rv2179c-like
DEDDh_C
YhfH
Zn_ribbon_8
Motif
Other DBs
NCBI-ProteinID:
ADK16117
UniProt:
D8GQ26
LinkDB
All DBs
Position
complement(3394134..3398483)
Genome browser
AA seq
1449 aa
AA seq
DB search
MKRINEIFSDYETEGNINAAIVESVALSKKTKTLEMKINSDKYIEIKEIQRLNKFIRERF
SLKNSKIDVRYAEDTDKKPIEDELKNIIFLVADKHPALRAILLNNSEYEVNGNTINFNLK
ISVSEFLKSMDYDKKISKAIKSMYGTEYKINFVDKLGSEELIKFEEDKRESEMLFIKKEI
NSARSNNVSKLPNKPVEKNQETKVENHRKKTNNPFLILGRSNSIREPVVKITDITPDEGR
IAIEGEISNMETKELRSGKILISFDLYDGSSSMTCKVFCKPGEDSEVLSRLKKAKGIRLS
GNSGYSKFSQEIEIIANTIIETEGMKKVQRQDKSEVKRVELHMHTQMSQMDAMTSATDLI
KRAMSWGMKSIAITDHGVVQAFPEAHKLLGRDNPDMKIIYGVEAYLAPDKKPSVTNPKGQ
SIDTTYCVLDLETTGFSPVTEKITEIGIMKIKDGKVIDTFSTFVNPEKPIPLRVVEVTNI
TDDMVRNAETIEQVFPKMLDFIKDSVLVAHNAEFDVGFLKHNAKILGCDFDFTYVDTLSL
AQEVFPDFKTYKLGRIAKNLGIKVEVAHRALDDVATTVKVFNVMLEKLKERGAENLKDID
IYGRDEAAKKEEYKKLKTYHAIILAKDYVGLKNLYKLVSYSHLDYFYKKPRILKSLYKKY
SEGLILGSACSEGELYQAILLGKSDEEIEELAKGYDYLEIQPLGNNDYLVRTEQVPGKEY
LEEINKKIVALGEKLNKLVVATGDVHFMDPEDEIYRRILEAGQGFKDADNQAPLYLKTTE
EMLEEFSYLGKEKAYEVVVTNTNKISDMCEPISPISPEKCPPHIDGCEQTIKDIAYKKAH
ELYGDPLPEIVQSRLDRELESIIKNGFSVMYIIAQKLVWKSNEDGYLVGSRGSVGSSFVA
NMTGITEVNSLPPHYRCPKCKYSDFSDYGVKNGFDLPDKVCPVCGEKLAKDGIDIPFETF
LGFNGDKEPDIDLNFSGEYQAKAHKYTEVIFGKGTTFKAGTIGTIAEKTAFGYVKKYFDE
KNIPVNKAEITRISAGCTGIKRTTGQHPGGIIVVPKGREIFEFCPVQHPADDPNSDIITT
HFDYHSIDQNLLKLDILGHDDPTVIRMLQDITGVNPHEIPMDDKETMSIFSSTEALGVTP
EQINSKVGTFGIPEFGTKFVRGMLVDTMPKAFSDLICISGLSHGTDVWLGNAKDLIDDGI
VTLSEAICTRDDIMIYLIKKGLPPNSAFKIMELVRKGKVSKQPEKWAEYEALMREHKVPE
WYIDSCKKIKYMFPKAHAAAYVMMAFRIAWFKVHIPKAYYAAYFTIRAKAFDSEFMIFGK
EKVIEKMREIQIMGNQATPKDKDMYDDLEIVLEMYERGFKFLPIDLYKSHATKFIVEEDG
LRPPINSISGMGNIAAESIFSAAREEQFSSIEDVKKRAKIGNSAVDLLKKFGCLKGLPES
DQISFFDVI
NT seq
4350 nt
NT seq
+upstream
nt +downstream
nt
atgaagagaataaatgaaatttttagtgattatgaaacagaaggtaacataaatgctgcc
attgtagaatctgtagccttaagtaaaaaaactaaaactctagaaatgaaaattaactca
gataagtatattgaaataaaagaaatccagcgtcttaataaatttataagagaaaggttt
tcactaaagaattctaaaattgatgtaaggtatgctgaagatacagataaaaaacccata
gaagatgaattgaaaaatattatatttttggtggcagataagcaccctgctttaagagca
atactcttaaataatagtgaatatgaagtaaatggaaataccataaacttcaatttaaaa
atttcagtatcagagtttctaaaatctatggattatgataaaaaaatttctaaggctata
aaaagcatgtacggtacagaatataaaataaactttgttgataaattaggaagtgaagaa
ttaataaagtttgaagaggataaacgtgaaagcgaaatgctgtttattaaaaaggaaatt
aatagtgcacgaagcaataatgtgtctaaattgccaaataagcctgtagaaaaaaatcag
gaaacgaaagtagaaaatcataggaaaaaaactaataatccattcttgatattaggtaga
agtaatagtattagagagcctgtagtaaaaattactgatatcacaccagatgaaggtagg
atagctatagaaggtgaaatatccaacatggagacaaaggaactccgaagtggaaaaata
ctaatttcctttgacttgtatgatggttcaagttccatgacctgtaaggtattttgcaag
cccggtgaagacagtgaggtattatcaagacttaaaaaggctaagggtattaggctttct
ggaaactcaggttatagcaagttttctcaggaaattgagattattgccaatactataatt
gaaacagaaggcatgaagaaagttcaaagacaagataaatctgaggtgaagagggtagaa
cttcacatgcatacgcaaatgagccagatggatgctatgactagtgctactgatttaatt
aaaagagctatgagctggggcatgaaatcaattgctataacagatcatggagtagttcag
gcttttcctgaagcacataaacttttaggaagagataatccagatatgaagattatatat
ggggtcgaggcttatctggcaccagataaaaagccatctgtaacaaatcctaaaggacag
agtattgataccacttattgtgtattggatttagaaaccacaggattttcgccagtaaca
gaaaaaattactgaaataggaatcatgaaaatcaaggatggaaaggtaatagacacattc
agcacttttgtaaaccctgaaaagccaattccattaagagttgtagaggttacaaatata
actgatgatatggtaagaaatgcagaaaccatagagcaggtatttcctaaaatgctagat
tttataaaggatagtgttttggttgcacataatgctgaatttgatgtgggatttttaaag
cataatgccaaaattttagggtgtgactttgattttacatatgtagatactttgtcctta
gcacaggaggtcttccctgattttaaaacctataaattagggagaattgctaaaaacctt
ggtataaaggtggaagttgcccatagagctttggatgatgtggcaactactgttaaggtg
tttaatgtaatgcttgaaaagctaaaagaaaggggagcagaaaaccttaaagatatagat
atatatggccgtgatgaggcagctaaaaaggaagagtataaaaagcttaaaacttatcat
gcaataatactagcaaaggattatgtgggattaaagaatttatataagctggtatcttat
tctcatttggattatttttataaaaaacctcgtatattaaagagtttgtataaaaaatat
tctgagggcttaattcttggtagtgcctgtagtgaaggtgaactgtatcaagcaatacta
cttggaaaatccgatgaggaaattgaagaattagcaaaaggatacgattatttggagatt
cagcctctaggaaataatgattatttagtaaggacagagcaggtacctggtaaagaatat
ctagaggaaattaataaaaaaattgtagccctgggagaaaagttaaataaacttgtagtt
gctacaggagatgttcacttcatggacccggaggatgagatatacagacgtatactggaa
gcaggacagggatttaaggatgcagataatcaggctccattgtatttaaaaactacagag
gagatgcttgaggaattttcttatttgggaaaagaaaaggcctatgaggtggtagttaca
aataccaataagatatcagatatgtgtgagccaattagtcctatttcaccggagaaatgt
ccaccacatatagatggctgtgaacagactattaaggacattgcttataagaaggcccat
gaactgtatggagatccactgccagaaattgttcagtccagattggatagggagctggaa
tctattataaaaaatggattttctgtaatgtatattattgctcaaaagctagtatggaaa
tcaaatgaagatggctatctagtaggttctagaggatctgttggttcctcttttgtagca
aatatgaccggtataacggaagtaaattctctgccacctcattataggtgtcctaaatgc
aagtattcggacttttcagattacggtgttaaaaatggatttgacttaccggataaagtg
tgtcctgtttgtggagaaaagctagctaaggatggtatagatataccttttgaaaccttt
ttaggcttcaatggagataaggagccagatatagatttaaacttttcaggagaatatcag
gcaaaggctcataaatatacagaggttatttttggaaaaggcacaacctttaaagctgga
actataggtactatagcagaaaagacggcttttggatacgtaaaaaagtactttgatgaa
aagaatattccagtaaacaaggcagaaataacaagaatctcagcaggttgtacaggtata
aaaagaaccactggacagcatccgggaggaattatagttgtgccaaaggggcgtgaaatc
tttgaattttgccctgtacagcatcctgcagacgatcctaattcagatattataaccaca
cattttgattatcactctattgaccagaacttattgaagcttgatatacttggacacgat
gatccaacagttataagaatgctgcaggatataactggggtgaatccccatgagataccg
atggatgataaggagactatgtctatattttcatctacagaagctctaggagtaacacca
gaacagataaattctaaggtaggaacctttggtattcctgaatttggtactaagtttgta
aggggaatgcttgtagatacaatgccaaaagcattttctgatttaatatgtatatcagga
ctttctcatggtaccgatgtgtggcttggaaatgcaaaggacttaattgatgatggaata
gttacattaagtgaagcaatatgtaccagggatgatattatgatttatcttatcaaaaaa
ggtctgccgccaaatagtgcatttaagataatggagctggtacgtaaaggaaaagtatcg
aagcagcctgaaaaatgggcagagtatgaagctttaatgagagaacataaagtaccggaa
tggtacatagattcctgtaaaaagataaaatatatgtttcctaaagctcatgctgcagct
tatgtaatgatggcatttagaatagcctggtttaaggttcacataccaaaggcttattat
gcagcatactttactattagagcaaaggcctttgacagtgaatttatgatatttggaaaa
gaaaaggttatagaaaagatgagagaaattcaaatcatgggtaatcaagccactcctaag
gataaggatatgtatgatgacttagagatagttctggaaatgtatgagaggggatttaaa
ttcttaccaattgatttgtataaatctcatgctaccaaatttatagtagaggaagatggt
ttaagaccacctataaatagtatatctggcatgggaaatatcgcagcggaaagtatattt
agtgcagcacgagaagagcaattcagctctatagaggatgtaaagaaacgtgctaaaatt
ggaaattctgctgtagatttacttaaaaagtttggctgtttaaaaggtcttccagaaagt
gatcaaataagcttttttgatgtaatttaa
DBGET
integrated database retrieval system
