Clostridium ljungdahlii: CLJU_c38340
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Entry
CLJU_c38340 CDS
T01276
Name
(GenBank) predicted ATP-dependent DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
clj
Clostridium ljungdahlii
Pathway
clj03420
Nucleotide excision repair
clj03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
clj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CLJU_c38340
03430 Mismatch repair
CLJU_c38340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
clj03400
]
CLJU_c38340
Enzymes [BR:
clj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CLJU_c38340
DNA repair and recombination proteins [BR:
clj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CLJU_c38340
MMR (mismatch excision repair)
Other MMR factors
CLJU_c38340
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
AAA_19
UvrD_C
Viral_helicase1
SLFN-g3_helicase
UvrD_C_2
CbiA
DEAD
AAA_30
AAA_16
ResIII
AAA_18
CC4_CEP85
STIV_turret_1st
Motif
Other DBs
NCBI-ProteinID:
ADK16859
UniProt:
D8GUI2
LinkDB
All DBs
Position
complement(4161720..4163849)
Genome browser
AA seq
709 aa
AA seq
DB search
MYRDDLKKELEKEVELDLEREKLKEVLKEIEVQILEYIESRKKVIDYILKLREKNLEQYE
DDEDKVIEYFNHEMYEKEEQYRLVNKSIKELTILSNSPYFGKVKFQDEYGEEEIYIGRFG
VTGRKSYEPIVIDWRSPVSSLFYAGKLGTVKYTSPMGEVETEVLSKRQFIIKKSNLVGMF
DSSIDVKDEILQMVLSKNAGEKLKDIVMTIQKEQDNLIRQPRTGAIVVNGVAGSGKTTIA
LHRVAYLLYNYRKVLQGKVLILGPNSIFIDYISLVLPSLGEEKVTQTTFREFAEDILNVP
YIMDFKDYMEKVLSHQKDFSEEIKYKGSLQYVQDIDNFIGSLEKDCFKIEDVFFYDKLIM
SGEDIDKMLNYYFKDMPLFKRSARIKRVIYSKVRDERNRLIISIQKEYENKVKSLTESEL
NDCGNELEYKRRNGIRDVIKEVINIKKNKLIWLKNPDVITLYNDFNGNKLLIYDDLAPIL
YLKIKLEGLRYRDEVRHIVIDEAQDYSPLQFRVIYELTKCKSFTIVGDTNQKIIFSKETP
AVEKLENILPDLEIKRFSLNKSYRSTNEIIDYANKYLEGDKTVPLVRSGKKVVEKRVDNS
KELVDKILDNVVELKERGYESIAIICRDLKDTEAIGNLIKARIHINVLDREDMIYSSGEV
ILPSYFAKGLEFDAVIMIDTCEKNENTLKYIMATRALHELYVYKTSSIN
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
atgtatagagacgatttaaaaaaggaattggagaaggaagtcgagctggatcttgaaagg
gaaaaattaaaagaagtcttaaaagaaattgaggtacaaattttagaatacattgagagt
agaaaaaaagtaatagactatattttaaagctaagagaaaaaaatttggaacagtacgaa
gatgatgaagacaaagttatagaatattttaaccatgaaatgtacgaaaaggaagaacag
tataggctagtaaataaaagcataaaagaacttaccatactgagcaattcaccttatttt
ggtaaggtaaaatttcaggatgaatatggagaggaagaaatatacataggtaggtttggt
gtgacaggaaggaaaagttacgaacctattgtaattgactggagatcacctgtatcttct
ttgttttatgcaggtaagctgggaactgtaaaatatacatctcctatgggagaagtagaa
acagaagtgctttctaagagacaatttattataaaaaaatctaatctagtaggtatgttt
gattccagtatagatgtaaaagatgaaatcttgcaaatggtacttagcaaaaatgctggt
gaaaagttaaaagatattgtaatgactatacaaaaagaacaggataatttaataagacag
cctagaacaggggctattgtggtaaatggagtagcaggaagtggaaaaactactatagca
ctgcatagagtagcttacttattatacaattatagaaaggttcttcaaggaaaggtactg
atattaggtcctaatagcatatttatagattatatatcacttgtacttccaagtttagga
gaggaaaaggttactcaaactacttttagagaatttgcagaggatattctaaatgtgcct
tatataatggattttaaggattatatggaaaaagtattaagtcaccaaaaagatttttct
gaagaaattaagtataagggttctttacaatatgtgcaggatatagataattttattggc
agtttggaaaaagattgttttaagatagaggatgtgtttttttacgataaacttataatg
tctggagaagacatagataagatgcttaattattattttaaagatatgcctctatttaag
agaagtgccaggataaaaagagtcatatactcaaaggtaagggatgaaagaaacaggcta
ataatatctatacaaaaagaatatgaaaataaggtgaagagtctaacggaaagtgaacta
aatgattgtggaaatgagctggagtacaaaagacgaaatggtataagagatgtaataaaa
gaagtaattaatatcaaaaaaaataagttaatctggcttaaaaatcctgatgtgattaca
ttatacaatgattttaatggaaataagttgctgatttatgatgatttagctcctatttta
tatttaaaaataaagctggaagggctaagatatagagatgaagtaagacatatagtgata
gatgaagcacaagattattctccgctgcagtttcgggttatttatgaacttacaaagtgt
aaatcttttactatagtaggagataccaatcagaaaattatattttcaaaagagacacct
gccgtggaaaaattggaaaacatactcccggatttagagataaagcgtttttcattaaat
aaaagctatagatccacaaatgagataattgattatgctaataaatatctagaaggggat
aaaaccgtacctctagttagaagtggaaaaaaagttgtggaaaaaagggtagataattcc
aaagaacttgtggacaaaatactagataatgttgtagaattaaaagaaagaggttatgaa
agtatagccataatttgcagggatttaaaagacacggaagctataggtaatttaataaaa
gcaagaattcatataaatgtgcttgatagagaagatatgatttattccagcggcgaagtt
atacttccaagttattttgccaaaggtttagaatttgacgcggttataatgatagatacc
tgtgaaaaaaatgaaaatacattaaaatatataatggctacaagggcgctgcatgaatta
tatgtgtataagacttcctcgattaattaa
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