Capnocytophaga leadbetteri: CGC53_04235
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Entry
CGC53_04235 CDS
T05313
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
clk
Capnocytophaga leadbetteri
Pathway
clk03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
clk00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CGC53_04235
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
clk03021
]
CGC53_04235
03400 DNA repair and recombination proteins [BR:
clk03400
]
CGC53_04235
Enzymes [BR:
clk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CGC53_04235
Transcription machinery [BR:
clk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CGC53_04235
DNA repair and recombination proteins [BR:
clk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CGC53_04235
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
RNA_pol_L_2
DUF4249
Motif
Other DBs
NCBI-ProteinID:
ATA81611
UniProt:
A0A250F911
LinkDB
All DBs
Position
complement(984763..985755)
Genome browser
AA seq
330 aa
AA seq
DB search
MALFNFQKPDKVIMIESSDFEGRFEFRPLEPGYGLTIGNALRRVMLSSLEGFAITSVKFD
KVEHEFSTISGVREDVTEIILNLKQVRFKRQVEDVEEETATISVSGKKQLTAGDFQKTLS
GFQILNPDLVICNMETTASFSMTITIEKGRGYVSAEENAKPNAAIGVIATDSIFTPVKNV
KYSIENYRVEQKTDYEKLVFEIKTDGSIHPKFALTEAAKTLIHHFMLFSDERITLEADEV
AQTDAYDEESLHMRQLLKTKLIDMDLSVRALNCLKAAEVETLGDLVSFNKADLMKFRNFG
KKSLIELDELVANKGLVFGMDISKYKLDKD
NT seq
993 nt
NT seq
+upstream
nt +downstream
nt
atggcattatttaactttcaaaaaccagataaagttataatgattgaatcatcggatttc
gaggggcgatttgagtttcgccctttggaacccggatatggtttaactattggtaacgca
ttacgcagggtgatgctttcttcattagaaggtttcgctattacttctgtgaaatttgat
aaagtagaacacgaattttctactatatcaggtgtcagggaagatgttactgaaatcatt
ctgaacttgaaacaagtgcgtttcaaacgtcaagtggaagatgtagaagaagaaaccgct
actattagcgtttctggtaaaaaacaattgactgccggtgattttcaaaagaccctttca
ggtttccaaattctgaatccagaccttgtgatttgcaatatggaaacgactgcttctttc
tcgatgacaattactatagaaaaaggtcgtggttatgtgtcagcagaggagaatgcgaaa
cctaacgcagctataggagttatcgctacagattcgatatttactcctgtaaagaacgtt
aaatactctattgaaaattatcgtgttgaacaaaaaacagactacgagaaattagtcttt
gaaataaaaacagatggttcaatccatccaaaatttgctcttactgaagcagctaagact
ctgatacatcactttatgttgttctctgatgagagaataaccttagaagccgatgaggta
gctcaaacagatgcatacgatgaagagtcgctacatatgagacagctattgaaaacgaag
ctaatagatatggatttatctgttagagcacttaactgcttaaaagcagctgaagtagaa
actcttggagacttggtttcgtttaacaaagcagaccttatgaagtttagaaacttcggt
aaaaaatctttgatagaattagatgaattagtagctaacaaaggtttagtatttggtatg
gatatatcaaaatacaaattagataaagattaa
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