Capnocytophaga leadbetteri: CGC53_05250
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Entry
CGC53_05250 CDS
T05313
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
clk
Capnocytophaga leadbetteri
Brite
KEGG Orthology (KO) [BR:
clk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
clk03016
]
CGC53_05250
Enzymes [BR:
clk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
CGC53_05250
Transfer RNA biogenesis [BR:
clk03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
CGC53_05250
Prokaryotic type
tRNA splicing ligases
CGC53_05250
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
ATA81793
UniProt:
A0A250F9J1
LinkDB
All DBs
Position
1164933..1166324
Genome browser
AA seq
463 aa
AA seq
DB search
MANLKLKGKDLLKLGFPNNQSINVALEVMKRNYATKNLAYVKSVLEDILKNPAQYEGHLT
FGQIAEALLSSTKTEKRQLNSLRAPYHIFGEDITEEAKTQLYTALKLPISVGGALMPDAH
SGYGLPIGGVLAVENAVIPYGVGLDIGCRMCLSILDIPVSYLSGARDKYEKALAEHTKFG
MYETHKSHVDHEIFDRDTFSLIPILKRLKDKAIKQMGTSGSGNHFVEFGEVELLADDPQI
GLPKGKYLGILSHSGSRGFGAEIAQYYVRVAAEQCPLPKEAQQFAWLDLSTHLGLEYWTA
MNLAGDYASACHDDIHRRLIRAVGGRLRARIENHHNFAWKEFHNGKEVVVHRKGATPAGE
GVLGIIPASMTDAGYIVRGKGNAESFSSASHGAGRAFSRNESRNRFTSSDIKKALKAKDI
TLIGGNAEEAPMAYKNIEAVMQSQTDLVEVIGRFQPRIVRMDK
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atggcaaatttaaaactcaaagggaaagacctactgaagttagggttcccgaataatcaa
tctattaatgtagcgttggaagtgatgaaacgcaattacgctactaaaaacttggcgtat
gtaaagtcggtacttgaggatattctaaaaaatcctgcacagtacgaagggcaccttact
ttcgggcagatagccgaagcgctgctttcgtctactaaaaccgaaaaacgacagctcaac
agcttgcgcgccccttatcatatctttggcgaggacatcaccgaagaggcaaaaacacaa
ctctacacggctctgaaactccctatatcggtaggaggtgccctgatgcccgatgcccat
agtggttatgggctgcctatagggggcgtgctggcagtagagaatgctgtcattccttat
ggagtgggcttggacatcggttgccgtatgtgcctcagtatcctcgatatacctgtatcg
tacctctcgggggcacgcgataagtacgagaaagcccttgccgaacatacgaagttcggt
atgtacgaaacccacaaatcgcacgtagaccacgagattttcgaccgcgatactttttcg
cttatccctatcctcaaacgattgaaggacaaagctatcaagcagatgggtacctcgggc
agtggcaaccactttgtggagtttggcgaggtagagcttttagcagacgacccacaaata
gggctacctaaaggcaagtacttaggaatcctttctcatagcggttcgcgtgggtttggc
gctgaaattgcccagtattacgtgcgcgtggctgccgaacaatgtccgctacccaaagaa
gcccagcagtttgcgtggctcgacctcagcactcacttagggttagagtattggacagct
atgaaccttgcaggcgattacgcttcggcttgtcacgatgacattcaccgccgacttatt
cgcgctgtgggcgggcgactaagagcgcgtattgagaaccaccacaactttgcgtggaaa
gagttccacaatggcaaagaggtggtagtacaccgcaagggggctacccctgctggcgag
ggggtattgggtattatccctgcctcgatgactgatgccggctacatagtgcgcggcaaa
ggcaatgccgagagttttagttcagcttcacacggggctgggcgtgccttctcgcgcaat
gagagtagaaatcgctttaccagttcagatattaaaaaagcactgaaagccaaagatatt
acccttatcgggggcaatgccgaagaagcccctatggcgtataaaaacatcgaggcggta
atgcaatcgcaaacagatttggtagaggtaatagggcgctttcagcctcgcattgtgcgt
atggataagtaa
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