Capnocytophaga leadbetteri: CGC53_08020
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Entry
CGC53_08020 CDS
T05313
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
clk
Capnocytophaga leadbetteri
Pathway
clk03410
Base excision repair
clk03430
Mismatch repair
clk03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
clk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CGC53_08020 (recJ)
03430 Mismatch repair
CGC53_08020 (recJ)
03440 Homologous recombination
CGC53_08020 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
clk03400
]
CGC53_08020 (recJ)
DNA repair and recombination proteins [BR:
clk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
CGC53_08020 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
CGC53_08020 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CGC53_08020 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
PDDEXK_9
Toprim
DNA_ligase_aden
Motif
Other DBs
NCBI-ProteinID:
ATA82292
UniProt:
A0A250FAY5
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All DBs
Position
complement(1777385..1779082)
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AA seq
565 aa
AA seq
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MNYIWEPKPLPSEATIEKLRQELHLSQTTATLLAQRGITTYDEAMHFFSPSLASLHDPFL
MKDMHKAVARLSKAINTQEKILIYGDYDVDGTSAVSLLYRYLRSHTSLLYTYIPDRYTEG
YGISFQGIDYAASKGCSLIIALDCGIKAIDKVQYATDKGIDFIIGDHHRPDTQVPDAVAI
LNPQQADCPYPYKELCGCGIGFKLVQAYQQHLSRPFEEIRPLLDLVAIATAADIVAMNGE
NRTLTYFGLEVINQQPSAGVSALLGENQKRVGIGDVVFKAAPRINAAGRIEHGKYAVALL
TETDSHKAKEKAYEIELLNSERKELDSSITQEALAQIEENGEQNRYSTVVFNPHWHKGVI
GIVASRLIETYYRPTLVFTQSGNKYAASARSITGFDIYDALEQCSEYLEQFGGHTYAAGL
TLLPEQYPDFKEAFEQVVAQKLANLPHEPKICFDTQLPLSKITEKLIGVLKRFEPFGPNN
LAPIFYADNVIDTGFAKAIGKDEKHLKLNLREVGSPHYFGAVAFDLADRLPIVESGRPFS
IIYSIEENIWNGIIRPQLRIRDIKG
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
atgaattatatttgggaaccaaaacctctaccttcagaagctactattgaaaaactcaga
caagaactccatttgagccaaaccaccgctaccctattagcccagcgcggtatcactact
tatgatgaggcaatgcacttcttcagccccagtttagcctctctgcacgacccttttctg
atgaaagatatgcacaaggcagtcgcgcgtctgagcaaggctatcaatactcaagaaaaa
atacttatttacggcgattatgatgtagatggcacctcagccgtatcgctgttgtaccgc
tacctcagaagccatacttctctgctctacacctacatacccgaccgctataccgaaggc
tatggcatttcttttcaggggatagactacgctgccagcaagggctgtagccttatcatt
gccctcgactgtggcattaaagctattgataaggtgcagtatgccaccgataaaggcatc
gactttattatcggcgaccaccaccgccccgatacgcaagtgcctgacgccgtggctata
ctcaatccccaacaagccgattgcccctatccttacaaagagctctgcggctgtggtata
ggcttcaagttagtgcaagcctaccaacaacatttatcacgtccttttgaagaaatacgc
cctttgttagatttggtagctattgccactgctgccgacatagtagcgatgaatggcgaa
aatcgcacccttacctactttggcttagaggtgataaaccagcaaccttcagcaggagtc
agtgctcttttaggtgaaaatcaaaaaagggtaggtattggtgatgtagtgtttaaggca
gcacctcgcatcaatgcagcaggacggatagaacacggcaaatacgcagtagccctactg
accgaaaccgacagccacaaggcaaaagaaaaagcctacgagattgaattgctaaatagc
gaacggaaagaattagacagcagtattacccaagaggctttggctcagatagaagaaaac
ggagagcaaaaccgctatagtactgtagtgttcaaccctcattggcataagggggtcatt
ggtattgtagcctcgcgcctaatagaaacctattaccggcctactttagtctttacccaa
agtggcaacaaatatgccgcatcggcacgctctattacagggtttgacatctacgacgct
ttagagcaatgtagcgagtatctggagcaatttggcggacacacctatgccgcagggctg
acgctcttacctgagcaatacccagacttcaaagaagcttttgagcaagtagtagcgcaa
aagttagctaatttgcctcacgagcctaaaatctgctttgatacccagctaccgctgagc
aaaataaccgaaaagctaataggggtactcaaacgctttgagccttttggtcctaacaat
ttagcccctattttctatgctgacaatgttattgatacggggtttgctaaagctattggg
aaagatgaaaagcacctaaagctcaacctacgcgaggttggcagtcctcactacttcggg
gcagtagcctttgatttagctgaccgattgcccatagtagaatcggggcgccctttcagc
attatctactctatagaagaaaacatatggaatggcattatacgtcctcagttgcgcata
cgcgacatcaaggggtaa
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