Capnocytophaga leadbetteri: CGC53_10765
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Entry
CGC53_10765 CDS
T05313
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
clk
Capnocytophaga leadbetteri
Pathway
clk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
clk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CGC53_10765
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
clk03021
]
CGC53_10765
03019 Messenger RNA biogenesis [BR:
clk03019
]
CGC53_10765
Transcription machinery [BR:
clk03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
CGC53_10765
Messenger RNA biogenesis [BR:
clk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CGC53_10765
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_25
OB_RNB
NACHT
AAA_22
S1CSD-TOTE-2
AAA
Motif
Other DBs
NCBI-ProteinID:
ATA82789
UniProt:
A0A250FCC4
LinkDB
All DBs
Position
2411987..2413711
Genome browser
AA seq
574 aa
AA seq
DB search
MFNFVELKTKKLPELQAIAQQLNVPKYRYLNKLDLINQIIAFQEKGGQTPLPQEDAPKKT
VVAADSQSETKSEAKSETRSASKSEAKPEAKSESKPTSKSEAKPQPEAKKKGGKKKIEVP
QKVGSSNQENFAKTTVSKSVRPEEENKGDYKPSFQKKNTSQNTNTLPKAAAPAANYNPNN
NYVVDADNFDKEKKNRYRAPDFEFDSVVDCEGVLDITADGYGFLRSSDYNYLASPDDIYV
SPSQIRLFGLQTGDTVHGEVRPPKEGEKYYPLLKVIKINGLDPQVVRDRVLFEHLTPLFP
NEKFELAGRGSTISTRLIDLFAPIGKGQRGMIVAQPKTGKTMLLKDIANAISKNHPEVYL
MVLLIDERPEEVTDMQRSVRGEIISSTFDKEASEHVRIANIVLEKAKRLVECGHDVVILL
DSITRLARAYNTVQPASGKVLTGGVDANALHKPKRFFGAARNIENGGSLSIIATALTDTG
SKMDEVIFEEFKGTGNMELQLDRRIANRRIFPAIDLMASSTRRDDLLLDENTLNRTWVLR
KYLAEMNPIEAMEFMEKQMKQTRNNQEFLATMNN
NT seq
1725 nt
NT seq
+upstream
nt +downstream
nt
atgttcaactttgtagagttaaaaacaaaaaagcttcctgaactacaggctatagctcag
cagctaaatgtacctaagtatcgctatctgaataagttagatcttataaatcagattatt
gcctttcaggagaaaggaggtcaaacgcctttgcctcaggaagatgcccctaagaaaact
gtagtagccgctgatagtcaatcagaaactaagtcagaagccaaatcagagactaggtca
gcatctaaatcagaagccaaaccggaagctaaatcagaatctaaacctacctctaaatca
gaggctaaaccccaaccagaagctaaaaagaaaggtggaaaaaagaaaatagaagttccg
caaaaagtaggaagttctaatcaagagaattttgccaaaacaactgttagtaagtcagtt
agaccagaagaagaaaataaaggggactataaaccgtcttttcagaagaaaaatacttca
caaaacactaacacccttcctaaagcagctgctcctgctgctaattacaatcctaacaat
aattatgtagttgacgctgataacttcgacaaagagaagaaaaatcgctatagagctcct
gattttgagtttgatagcgtggtagattgtgaaggagtacttgatattacagctgatggg
tatggctttttgcgttcttcggactataattatttagcctcgccagatgatatttatgta
tcgccttcacaaatacgcctgtttggattgcaaaccggtgatacggtacacggagaggta
cgtccgcctaaagaaggagaaaagtactatccgctcttaaaagtgattaagattaacggt
cttgacccacaagtggtgcgcgatagggttctttttgagcatcttactcctctttttcct
aatgaaaaatttgagttagctggtagaggctcaactatttcaacacgcctaattgactta
tttgcccccattggaaaagggcagcgcggtatgatagtggcgcaacctaaaacgggtaaa
acgatgttgctaaaagacattgctaatgctatcagtaagaatcaccctgaagtgtacctg
atggtattgcttatagacgaacgccctgaggaggtgactgatatgcagcgcagtgtaagg
ggagaaattatctcatcaacttttgataaagaggcaagtgaacatgtaagaatagccaat
atagtattagaaaaggcaaaacgattggtagaatgcggtcacgatgtggtaattctgctt
gactcaataacccgcttggcacgtgcttataatacggtgcaaccggcttcgggtaaggtg
cttacagggggggtagatgccaatgcattacacaaacctaaacgcttttttggtgcggcg
cgtaatatagaaaacggaggatcgctatcaattatagctacagctcttactgatacgggt
tcgaagatggatgaagtgatttttgaagaatttaaaggaacgggcaatatggagctgcaa
ttagatagacgtatagctaaccgccgtattttccctgctatagacctgatggcttcttct
acacgtcgtgatgacctattattagatgaaaatacgctgaaccgtacgtgggtgttgcgc
aagtatttggcggagatgaatccgatagaagccatggagtttatggagaaacagatgaag
caaacgcggaataatcaagaatttttagcaacaatgaataattaa
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