Campylobacter lari subsp. concheus LMG 11760: CONCH_0011
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Entry
CONCH_0011 CDS
T03557
Symbol
recJ
Name
(GenBank) single-stranded DNA-specific exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
cll
Campylobacter lari subsp. concheus LMG 11760
Pathway
cll03410
Base excision repair
cll03430
Mismatch repair
cll03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cll00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CONCH_0011 (recJ)
03430 Mismatch repair
CONCH_0011 (recJ)
03440 Homologous recombination
CONCH_0011 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cll03400
]
CONCH_0011 (recJ)
DNA repair and recombination proteins [BR:
cll03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
CONCH_0011 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
CONCH_0011 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CONCH_0011 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
DUF87
Motif
Other DBs
NCBI-ProteinID:
AJC88466
LinkDB
All DBs
Position
10092..11663
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AA seq
523 aa
AA seq
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MLNKAKIKEILHQRFINDTHVKLCDLPMPSCLKDVYKGALRIKEAIEKNQKLAIVGDYDV
DGVISCVILSEFFDDIGYDYVVKIPNRFKDGYGLNEEIINELNGVDLIITVDNGIAAFDA
AELCLQKGIDLIITDHHMPPVTLPKAYAIINPKQQDCDFPDIEICGAQVAWYLVAAIKEV
CKINYNMCKFIELLSIAIIADMMELRDLNRALVRKGIECINDSKRVAFKAIKQYFGKDKF
ELDNISFLIAPLINSAGRMDDAIISYKFLHSKNIDEVMGYLEQIITYNNSRKDEERELFK
QCLEQVDENDPVIIVNGQNWHEGVLGIVASRLAKHFNKPAFVFSECEQKAKASVRSVGRI
DILNVIEQAKEFVLSYGGHKGAAGVLVELEKFSVFKSRLYEICQNIPKDDFYNADEVLGS
IDPNEVDFELLEILEFFEPFGHKNPRPYFKFDKLFVKNKRKLGKDENHMKLILTQGNKTL
EALFFNFDYEPELGESIDLIASVSKNNFRGLITPQLTIKEILR
NT seq
1572 nt
NT seq
+upstream
nt +downstream
nt
atgctaaataaagctaaaataaaagaaattttacaccagcgttttatcaacgatacgcat
gtaaagctttgtgatttacctatgccatcttgtttaaaagatgtttataagggtgctttg
cgtatcaaagaagcgattgaaaaaaatcaaaaacttgctattgttggggattatgatgtt
gatggggtaatttcttgtgtgattttatctgaattttttgatgatatcggatatgactat
gtggtaaaaattccaaatcgttttaaagatggatatggtctaaatgaagaaatcatcaat
gaactcaatggagtagatttaatcatcactgtagataatggtatagcagcttttgatgca
gcagagctttgtttgcaaaaaggaattgatttaatcataactgatcatcatatgcctcca
gttactttaccaaaagcttatgcgatcattaatcctaaacaacaagattgtgattttcct
gatattgaaatttgtggagctcaagtggcttggtatttagtcgctgcgataaaagaagtg
tgtaagattaattacaatatgtgtaaatttatagagcttttatctatcgcaattatcgca
gatatgatggagcttagagatttaaatagagccttagttagaaaaggtatagaatgtatt
aatgattcaaagcgtgtagcatttaaagctattaagcagtattttggtaaggataaattc
gaacttgataatatcagctttttaatcgcacctttgattaatagtgcaggtagaatggat
gatgcgattatttcttataaatttttacattctaaaaatatcgatgaggttatgggttat
ttagaacaaattattacttataataatagccgcaaagatgaagaacgcgagctttttaag
cagtgtttagaacaagttgatgaaaatgatcctgtgattattgtcaatggccaaaattgg
catgagggtgttttgggcatagttgcaagtcgtttggcaaagcattttaacaaacccgct
tttgttttttcagaatgtgagcaaaaggctaaagctagtgttagaagcgtgggtaggata
gatattttaaatgttatagaacaagctaaagaatttgttttaagctatggcgggcataaa
ggtgcagctggagttttagtagagcttgaaaaatttagtgtttttaaaagtaggctttat
gaaatttgtcaaaatatccctaaagatgatttttacaatgctgatgaggttttaggtagt
attgatccaaatgaagttgattttgaacttttagagatattagaattttttgagcctttt
gggcataaaaatccaaggccatattttaaatttgataagctttttgtaaaaaataaaaga
aagctaggtaaagatgaaaatcacatgaagcttattttaactcaaggaaataaaactcta
gaagctttattttttaattttgactatgagccagagcttggagaaagcattgatcttata
gctagtgtttctaaaaataattttagaggattaatcacccctcaacttactataaaagaa
attcttagataa
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