Campylobacter lari subsp. concheus LMG 11760: CONCH_0452
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Entry
CONCH_0452 CDS
T03557
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
cll
Campylobacter lari subsp. concheus LMG 11760
Pathway
cll03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cll00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CONCH_0452 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cll03021
]
CONCH_0452 (rpoB)
03400 DNA repair and recombination proteins [BR:
cll03400
]
CONCH_0452 (rpoB)
Enzymes [BR:
cll01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CONCH_0452 (rpoB)
Transcription machinery [BR:
cll03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CONCH_0452 (rpoB)
DNA repair and recombination proteins [BR:
cll03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CONCH_0452 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
AJC88889
LinkDB
All DBs
Position
413085..417218
Genome browser
AA seq
1377 aa
AA seq
DB search
MLNSQSGNRLRIDFSNVPQQIDIPNLLQLQKKSFDYFLNIDAKNSESGIEKVFKSIFPIH
DPQNRLSLEYVSSEVGKPKYTIRECMERGLTYSVNLKMKIRLTLHEKDEKTGEKIGIKDI
KEQEIYIREIPLMTDRISFIINGVERVVVNQLHRSPGVIFKEEESSTVANKLVYTAQIIP
DRGSWLYFEYDAKDVLYVRINKRRKVPITILFRALGYKKQDIIKLFYPIQTIHVKKDKFL
TEFNPNDFLDRVEYDLKDEKGNVVHQAGKRMTKKKAEQLVKDGVKWVEYPVEILTNRYLA
NPIINKETGEVLFDSLTLLDEGKLAKIKEEKQFDIANDLANGVDAAIINSFIQDNETLKL
LKQTENIDDENDLAAIRIYKVMRPGEPVVKDAAKAFVNDLFFNPERYDLTKVGRMKMNHK
LGLDTPEYVTVLTNEDIVKTAKYLIKVKNGRGHIDDRDHLGNRRIRSIGELLANELHVGL
AKMQKSIRDKFTALNTDIDKVMPYDLINPKTITVTIMEFFTGGQLSQFMDQTNPLSEVTH
KRRLSALGEGGLVKERAGFEVRDVHATHYGRICPVETPEGQNIGLINTLSTYAKVNDLGF
VEAPYKKVENGKVSNEIVYLTATQEEGLVIAAASTKIDEKGNIVEEFVEARQDGETILAR
REEVHLIDLCSGMIVGVAASLIPFLEHDDANRALMGSNMQRQAVPLLTAQAPIVGTGMEK
IIARDAWEAIKAKRAGIVEKVDNKNIFILGEDENGPFIDHYKMEKNLRTNQNTTFTQHPI
VKKGDFVQAGQIIADGPSMDQGELAIGKNALIAFMPWHGYNYEDAIVISEKILREDTFTS
VHIYEKEVEARELKDGVEEITKDIPNVKEEDLAHLDESGIAKIGTHIKPGMILVGKVSPK
GEVKPTPEERLLRAIFGEKAGHVVNKSLYATASLEGVVVDVKIFTKKGYEKDARAIKAYD
DEKLNLEKEHHDRLLMMDREETLRVCSLLSKSALNLDEEINGVKYKKGSKVEITELEKIN
RFALNSLVKAYSKEVQKEYDDLKNHFQNEKKKLKTEHDEKLEILEKDDILPSGVVKLVKV
YIATKRKLKVGDKMAGRHGNKGIVSNIVPEVDMPYLPDGRPIDIALNPLGVPSRMNIGQI
LESHLGIVGMKLGDQIQEIFDRKQKDFVKELREKILEICSVSRLELEKKFVQTLNDEQLI
SYARDWVKGVKFATPVFEGVTVEEFGKLFEMAKIAMDGKSELYDGRTGEKMAERVHVGCM
YMLKLHHLVDEKVHARSTGPYSLVTQQPVGGKALFGGQRFGEMEVWALEAYGAAHTLREM
LTIKSDDVEGRFSAYKALTKGENVPATGIPETFFVLTNELKSLALDVEIFDKDENNE
NT seq
4134 nt
NT seq
+upstream
nt +downstream
nt
atgttaaattcacaatcaggaaatcgtttaagaatagacttctcgaatgttccacaacaa
atagacattccaaatttattacaattacaaaaaaaaagtttcgattattttttaaacata
gatgcgaaaaattcagaaagtggaattgaaaaagtatttaaatctatttttccaattcat
gatccacaaaatagattaagtttagaatatgtaagtagtgaagtaggtaaacctaagtac
actattagagagtgcatggaaagaggtttgacttattctgtaaatttaaaaatgaaaatc
cgtttaactttacatgaaaaagatgaaaaaacgggtgaaaaaattggtataaaagatatt
aaagagcaagaaatttatattagagaaattcctttaatgacagatagaatttctttcata
attaatggagttgaaagggttgtagtaaatcaacttcatagaagtccgggcgttatattt
aaagaagaagaaagttctactgttgcaaataaattagtatatacagcccaaattatacca
gatcgtggttcttggctttattttgaatatgatgctaaagatgtgctttatgtgcgtatt
aataaaagaagaaaagtgcctattacaattttatttagagcactcggttataaaaaacaa
gacattataaaattattttaccctatacaaactattcatgtcaaaaaagataaattttta
acagagtttaatccaaatgactttttagatagagttgagtatgacttaaaagatgaaaaa
ggtaatgtagttcatcaagctggtaaaagaatgacaaagaaaaaggctgagcagcttgta
aaagatggggttaaatgggttgaatatccagttgaaattttaacaaacagatatttagct
aaccctattattaataaagaaaccggcgaggttttatttgattctttaacgctattagat
gagggaaaactagcaaaaattaaagaagaaaaacagtttgatattgctaatgacttagct
aatggagtagatgctgctattattaattctttcattcaagataatgaaactttaaaatta
ttaaaacaaacagaaaatatagatgatgagaatgatttagcagctattagaatttataaa
gtaatgagaccaggcgaaccggtagtaaaagatgctgcaaaagcttttgtaaatgattta
ttttttaatcctgaaagatatgatctaacaaaagttggtcgtatgaaaatgaatcataag
ttaggtttagatacgcctgaatatgttacggttttaactaatgaagatatagtaaaaact
gcaaaatatttaattaaagtaaaaaatggtagaggacatattgatgatagagaccattta
ggcaatcgtcgtataagatcaattggagaacttttagctaatgaacttcatgtaggtctt
gctaaaatgcaaaaatcaatcagagataaatttacggctttaaatacagatattgataaa
gtaatgccttatgatttgattaatcctaagacaattactgtaacaattatggaatttttt
accggcggtcaattatctcaatttatggatcaaacaaatccattgagtgaagtgactcat
aaacgtcgtctatcagcgcttggtgaaggtggtttagtaaaagaaagagcaggttttgag
gtacgtgatgttcatgcaacgcattatggaagaatttgtcctgttgaaactccagaaggt
cagaacattgggttgattaatacgctttcaacttatgctaaagtaaatgatttaggtttt
gttgaagcaccttataagaaagtggaaaatggaaaagtaagtaatgaaattgtttacttg
actgctactcaagaagagggcttggtgattgcagctgcttcaactaaaattgatgaaaaa
ggtaatattgttgaggaatttgttgaagcaagacaagatggtgaaacaatcctagcaaga
agagaagaagtgcatttgattgacctttgttcaggtatgatagtaggggttgcagcatca
ttaatcccattcttagaacacgatgatgcaaacagagctttaatgggttcgaatatgcaa
cgtcaagcagtgcctttactaactgcacaagcacctatagtaggtactggtatggaaaaa
atcattgcgcgtgatgcttgggaggctattaaagctaaaagagcaggaattgtagaaaaa
gttgataataaaaatatttttattttgggtgaagatgaaaatgggccatttatagatcat
tacaaaatggaaaaaaatctaagaacaaatcaaaatacaacttttacgcagcatccaatt
gttaaaaaaggagattttgttcaagcaggtcaaattattgcagatggcccaagtatggat
caaggcgaacttgctattggtaagaatgccttaatcgcatttatgccatggcatgggtat
aactatgaagatgctattgtaattagtgagaaaattttacgtgaagatacttttactagt
gttcatatttatgaaaaagaagtagaggctagagagcttaaagatggtgtagaagaaatt
acaaaagacattccaaatgtaaaagaagaagatttagcacatcttgatgagagtggtatc
gctaaaataggaactcatataaagcctggtatgattttagttggtaaagtttcacctaag
ggtgaagtaaaacctacacctgaagaaagattattaagagctatttttggtgaaaaagct
gggcatgttgtaaacaaatctttatatgcaactgcctcattagaaggtgttgttgtagat
gtaaaaatcttcactaaaaaaggctatgaaaaagatgcacgcgctataaaagcttatgat
gatgaaaaattaaatcttgaaaaagaacatcatgatagacttttaatgatggatagagaa
gaaactttaagagtgtgctctttactttctaaatcagctttaaatttagatgaagaaata
aatggtgttaaatataaaaaaggctctaaagtagaaattacagaattagaaaaaattaat
cgttttgcattaaattctttagttaaagcttattctaaagaagtgcaaaaagaatatgat
gatttaaaaaatcatttccaaaatgagaagaaaaaacttaaaacagagcatgatgaaaaa
ttagagattttagaaaaagatgatattttaccaagtggagtagtaaaacttgttaaagta
tacatcgcgactaagagaaaattaaaagttggggataagatggcaggacgccatggaaat
aaaggtattgtatctaatatcgttccagaagttgatatgccatatttacctgatggaaga
cctattgatatagctttaaatcctttgggtgttccaagccgtatgaacataggacaaatt
cttgagagtcacttagggattgttggtatgaaactaggtgatcaaattcaagaaattttt
gatagaaaacaaaaagattttgtaaaagaattacgtgaaaaaattcttgaaatttgtagt
gtatctagacttgaactagaaaagaaatttgtacaaactttaaatgatgagcaacttatt
tcttatgcaagggattgggtcaaaggagtgaaatttgctactcctgtatttgaaggtgta
acggttgaagaatttggtaagctttttgaaatggctaaaatagctatggatggaaaaagc
gaactttatgatggaagaactggtgaaaaaatggcagaacgtgtacatgttggatgtatg
tatatgcttaaattgcatcacttggtagatgaaaaagttcacgcaagaagtaccgggcct
tatagtcttgtaacacaacaaccagttggcggtaaggctttatttggtggacaaagattt
ggtgagatggaagtttgggctcttgaggcttatggagcagctcatactctaagagagatg
ttaaccataaaatctgatgatgttgagggtagatttagtgcttataaagctttaacaaaa
ggcgagaatgttccagcaacaggtattccagagacattctttgtacttacaaatgaatta
aaatctcttgctttagatgttgaaatttttgataaggatgagaataatgagtaa
DBGET
integrated database retrieval system
