Campylobacter lari RM16712: UPTC16712_0123
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Entry
UPTC16712_0123 CDS
T03556
Symbol
ispA
Name
(GenBank) geranyl diphosphate synthase / farnesyl diphosphate synthase
KO
K13789
geranylgeranyl diphosphate synthase, type II [EC:
2.5.1.1
2.5.1.10
2.5.1.29
]
Organism
clm
Campylobacter lari RM16712
Pathway
clm00900
Terpenoid backbone biosynthesis
clm01100
Metabolic pathways
clm01110
Biosynthesis of secondary metabolites
Brite
KEGG Orthology (KO) [BR:
clm00001
]
09100 Metabolism
09109 Metabolism of terpenoids and polyketides
00900 Terpenoid backbone biosynthesis
UPTC16712_0123 (ispA)
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
clm01006
]
UPTC16712_0123 (ispA)
Enzymes [BR:
clm01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.1 dimethylallyltranstransferase
UPTC16712_0123 (ispA)
2.5.1.10 (2E,6E)-farnesyl diphosphate synthase
UPTC16712_0123 (ispA)
2.5.1.29 geranylgeranyl diphosphate synthase
UPTC16712_0123 (ispA)
Prenyltransferases [BR:
clm01006
]
Terpene biosynthesis
Prenyl diphosphate synthase
UPTC16712_0123 (ispA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
polyprenyl_synt
NOG1_N
Motif
Other DBs
NCBI-ProteinID:
AJD05671
LinkDB
All DBs
Position
109228..110076
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AA seq
282 aa
AA seq
DB search
MILEKFKQHLKQNFPKTQSFHPFFNEALKWMLEAGGKHFRAQLLLGIVNAKNPALFEKAL
NAALALEFIHTYSLIHDDLPAMDNASLRRGKQTLHKKYDETTAILVGDALNTQAFLLLSK
LDLKENVRLKLIETLAFNAGLNGMIIGQAIDCYFEDMSLNLEQVEFLHIHKTARLIAAAL
KMGCEICELDKKECEQIYEIGLLVGLVFQIKDDIIDATLDTQEAGKPTHNDLHKNSFVKL
LGLECAKKAKDDKIALCEEKMKNLDSKLTNELQILIDKYLKG
NT seq
849 nt
NT seq
+upstream
nt +downstream
nt
gtgattttagaaaaattcaaacaacatttaaagcaaaatttccctaaaactcaaagcttt
catccattttttaatgaggctttaaagtggatgttagaagctggcgggaagcattttaga
gcccaacttcttttgggtatagttaatgctaaaaatcctgctttgtttgaaaaggcttta
aatgcggctttggctttggaatttattcatacttactctttaatacatgatgatttacct
gctatggataatgcttctttgcgcagaggaaagcaaaccttgcacaaaaaatacgatgaa
accacagctattttagtaggtgatgctttaaatactcaagcttttttgctactttctaag
cttgatttaaaagaaaatgttagattaaaactcatagaaactttagcttttaatgcaggg
cttaatggtatgatcattggtcaggcgattgattgttattttgaagatatgtctttaaat
ttagaacaagttgagtttttgcacattcataaaactgcaagattgattgcagcggcttta
aaaatgggctgtgaaatttgtgagttagataaaaaagaatgtgagcaaatttatgaaata
gggcttttggtaggattagtttttcaaatcaaagatgatattatcgatgcgactttagat
acccaagaagcaggaaagccaactcataatgatttgcataaaaattcttttgttaaactt
ttaggtttagaatgtgctaaaaaggcaaaagatgataaaattgcattatgtgaagaaaaa
atgaaaaatttagactctaagcttactaatgagcttcaaattttgattgataaatattta
aaaggttaa
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