Campylobacter lari RM16712: UPTC16712_0167
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Entry
UPTC16712_0167 CDS
T03556
Symbol
topA
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
clm
Campylobacter lari RM16712
Brite
KEGG Orthology (KO) [BR:
clm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
clm03032
]
UPTC16712_0167 (topA)
03400 DNA repair and recombination proteins [BR:
clm03400
]
UPTC16712_0167 (topA)
Enzymes [BR:
clm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
UPTC16712_0167 (topA)
DNA replication proteins [BR:
clm03032
]
Prokaryotic type
DNA Topoisomerases
UPTC16712_0167 (topA)
DNA repair and recombination proteins [BR:
clm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
UPTC16712_0167 (topA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Toprim_4
Zn_ribbon_RPB9
DUF1272
HVO_2142
Toprim_2
DUF8054_C
Motif
Other DBs
NCBI-ProteinID:
AJD05712
LinkDB
All DBs
Position
complement(146234..148318)
Genome browser
AA seq
694 aa
AA seq
DB search
MKNLIIVESPAKAKTIGNFLGKDYEVIASKGHIRDLPKTSFGIKIEDENFKPEYRISNDH
SSLVKELKEKAKKAKTIYLATDEDREGEAIAYHIAKAINKDENSLPRIVFHEITKSAIEN
ALKNPRSLNINSVNAQQTRRLLDRIVGYKLSPLLNQKIQKGLSAGRVQSAALKIIVDRER
EIKAFVPLKYFSIDMIFEKDLQAELVEFQNQKIEKLSLTNEDRAKLIFEACKNANFKIKD
IESKDRKIAPQAPFMTSTLQQSASNRLGFNPKKTMMIAQKLYEGVKTHQGIMGVITYMRT
DSLNIAKEALEEVRKLIKNDFGKEYLPSKANIYTTKSKGAQEAHEAIRPTNLSFTPKLAS
EFLEKDEARLYTLIYNRFLASQMNPAISQTQNVYAKSNEASFKISGRKILFDGHYKVYGD
MDKDKILPNLKLEDILNIQNIELSSHFTEPPSRYSEAGLVKKLENLGIGRPSTYAPTISL
LSAREYVHIDKKQIIPNEIAFVVTEVLEQNFSDIVDSDFTSKMEDKLDIIAEGKMDWQEV
LREFYFPFMRKIDEGKKNIKSQKTFTKLDETCPDCGGELAIRKGRYGEFIACLNFPKCKY
SRNLKQETQNEEKNEKKLNTIGIKCPSCQEGEIVERFSKRGKFYGCSAYPKCNYISKYKP
SEEKCSECGETLIIKELKKGTFLECLKCKIKKEI
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaatttaatcatagtagaatcacctgctaaagctaaaaccataggtaattttcta
ggtaaagactatgaagtaatagcctctaaaggccacattagagatctacctaaaactagc
tttggtataaaaatagaagatgaaaattttaaacctgaatatagaatttcaaatgatcat
tcaagcttagtaaaagaactcaaagaaaaggctaaaaaagctaaaacaatctaccttgca
accgatgaggaccgcgagggtgaagccatagcttatcacatagctaaggctattaataaa
gatgaaaattccctgccacggatagtttttcatgaaattacaaaaagtgctatagaaaat
gctttaaaaaatccaagatctttaaatataaatagcgtcaacgctcagcaaactagacgc
ttacttgatcgcatagtaggttataaactaagtcctttactcaatcaaaaaattcaaaaa
ggcttaagcgcagggcgtgtgcaaagtgcagctttaaaaatcatcgtcgatagagaaaga
gaaatcaaagcctttgttcctttgaaatactttagtatagatatgatttttgaaaaagac
ttacaagctgaattagttgagtttcaaaatcaaaagatagaaaaactaagtctaactaat
gaagatagagctaagcttatctttgaagcttgcaaaaatgctaactttaaaataaaagat
atagaaagtaaagatagaaaaatagctccacaagcaccttttatgacctcaaccctacaa
caaagtgcgagcaatcgcctaggttttaaccctaaaaaaaccatgatgattgcccaaaaa
ctttatgagggcgtaaaaacccatcaaggcattatgggtgtgatcacttatatgagaact
gatagcctaaacatcgcaaaagaagccttagaagaagtaagaaaactcatcaaaaatgat
tttggtaaagaatacttgccaagcaaggcaaatatttacaccaccaaaagcaaaggcgct
caagaagcacacgaagctataagaccgaccaatcttagctttactccaaagcttgcaagt
gaatttttagaaaaagatgaagcaagattatatactttaatatataatcgctttttagct
tcacaaatgaaccctgccatctctcaaactcaaaatgtctatgcaaaatcaaatgaagca
agttttaaaataagtggtagaaaaattttatttgatgggcattataaagtatatggggat
atggataaagataaaattttacctaatttaaaactagaagatatactaaatatacaaaat
atagaattaagctcacattttaccgagccaccttcaagatactctgaagctggacttgtt
aaaaagttagaaaatcttggtataggacgcccttctacttatgctccaaccatctcttta
cttagtgcaagagaatatgtgcatatagataaaaaacaaatcatacctaatgaaatagcc
tttgttgtaacagaagttttagagcaaaactttagcgatatagtagatagtgattttact
tctaaaatggaagataaacttgacatcatagcagaaggcaaaatggactggcaagaagtt
ttaagagagttttattttccttttatgagaaaaattgatgagggtaaaaaaaatataaaa
agtcaaaaaacttttacaaaattagatgaaacctgccctgattgtggtggtgagcttgct
ataagaaaaggaagatatggagaatttatagcttgtttaaattttccaaaatgcaaatac
tcaagaaatttaaaacaagaaacacaaaatgaagaaaaaaatgagaaaaaactcaatacc
ataggcataaaatgcccaagctgccaagaaggcgagatcgtggagcgtttttctaagcgt
ggtaaattttatggttgtagcgcttatccaaaatgcaactatataagcaaatacaaacca
agtgaagaaaaatgtagcgaatgtggcgaaactttgatcatcaaagagcttaaaaaaggc
acatttttagagtgcttaaaatgcaaaatcaaaaaggaaatctaa
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