Campylobacter lari RM16712: UPTC16712_0515
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Entry
UPTC16712_0515 CDS
T03556
Symbol
pnp
Name
(GenBank) polynucleotide phosphorylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
clm
Campylobacter lari RM16712
Pathway
clm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
clm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
UPTC16712_0515 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clm03019
]
UPTC16712_0515 (pnp)
03016 Transfer RNA biogenesis [BR:
clm03016
]
UPTC16712_0515 (pnp)
Enzymes [BR:
clm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
UPTC16712_0515 (pnp)
Messenger RNA biogenesis [BR:
clm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
UPTC16712_0515 (pnp)
Transfer RNA biogenesis [BR:
clm03016
]
Prokaryotic type
tRNA degradation factors
UPTC16712_0515 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
KH_1
PNPase
S1_2
CsrA
S1CSD-TOTE-1
S1_RRP5
Motif
Other DBs
NCBI-ProteinID:
AJD06045
LinkDB
All DBs
Position
491530..493638
Genome browser
AA seq
702 aa
AA seq
DB search
MRHEININNHLEIFDTDKVAKQAAGAILMQEKNAVVLATVAREEKIVEEDFLPLTVQYIE
KAYAAGKIPGGYVKRETKPGDNETLSARIIDRSLRPLFPKGYAYPTQIVVMVLSADPEVD
LQVMSLNAASIALYLSDIPIKAPVCGVRIGRINNEFVLNPSNSELKNSTLDLYVAGVKDE
LLMIEMRALANKQNNKHCINELSEDDTLKALDFASNAILRGSNEYEKTFAAYRKNSKLEF
KIELDNAQIIDYIKNTYMTKLKIAINQMAKSERASEILQIAKEIESEAIAIENEWKFEDI
EKALHVCKRELIRSQIINENKRADGRGLKDVRKINIETNILPSAHGSCLFTRGQTQALVV
ATLGNDNDAQMSDLLTEKNPICEKFMVNYNFPGFSVGEASPIKAPGRRELGHGNLAKRAL
HPSVDVDYAHTIRLVSEILESNGSSSMATVCGGALALRAAGVKSEKLVAGVAMGLVFEDE
KYAILTDIMGLEDHDGDMDFKVAGSCEGITALQMDIKLGGIEQQVLKEALYQAKEAREHI
LKLMEEADRSIIVNEAILPKIEIFNVDPNKIPDIIGQGGKTIKEIIEKFEVNIDLDRDKG
EVKIAGINHDLISQSKEYILNLLHSKGSNKKRDRKEIPKFDIGEEFIGKVQKVVEFGVFV
ELKEGVDGLLHNSKIKEKLEVGNEIKVKVAEIKNGKVSLDLA
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
atgcgacatgaaataaatatcaataatcatcttgaaatatttgataccgataaggtagca
aaacaagctgctggtgcaattttaatgcaagaaaaaaatgcagtagtcttagcaactgta
gcaagagaagaaaaaatagtagaagaggattttttacctcttacagtgcaatatatagaa
aaagcctatgcagcaggtaaaattccaggtggctatgtaaaaagagaaactaaaccaggt
gacaatgaaacactaagcgcaaggattatagatagaagtttaagacctctttttccaaaa
ggctatgcttatccaacacaaattgttgtgatggttctttctgctgatcctgaagtagat
ttacaggtgatgagcttaaatgctgcaagtattgctttatatttaagtgatattcctatc
aaagcaccagtttgtggtgtaagaataggtcgtataaataatgaatttgttttaaatcca
agtaacagtgagctaaaaaatagcaccctagatctttatgtagcaggtgttaaagatgag
cttttaatgatagaaatgagagctttggcaaataagcaaaataacaaacattgtataaat
gagttaagtgaagatgatactttaaaagctttagattttgcaagtaatgcaattttacgt
ggctctaatgaatatgaaaaaacatttgctgcttatagaaaaaattccaaacttgagttt
aaaatagagctagataatgctcaaattattgactatataaaaaatacttatatgacaaaa
cttaaaattgctattaatcaaatggcaaaaagtgaaagagcgagtgaaattttgcaaatt
gcaaaagaaattgaaagcgaagcaatagctattgaaaatgaatggaaatttgaagatatt
gaaaaagctttgcatgtatgtaaaagagaacttattagaagccaaattattaatgaaaat
aaacgagcagatggtagaggtttgaaagatgttaggaagataaatatagaaacaaatatt
ttaccaagtgctcatggatcttgtctttttactagaggacaaacccaagctttagttgtt
gcaactttaggaaatgataatgatgcgcaaatgtcagatttgctaacagaaaaaaatcca
atttgtgaaaaatttatggttaattataatttcccggggttttctgtgggtgaggctagc
cctataaaagctcctggtagaagagaactaggacatggaaatttagcaaaacgagctttg
catcctagcgtggatgtagattatgctcatactattcgtttggtgtctgaaattttagaa
agtaatggttctagttctatggctactgtttgtggtggtgctttagctttaagagctgca
ggagtaaaaagtgaaaaactagtagcaggagtggcaatggggcttgtttttgaagatgaa
aaatatgctattttaaccgatatcatggggcttgaagatcacgatggagatatggatttt
aaagtggcaggaagttgtgaagggatcactgctttgcagatggatataaaacttggtggt
atagagcaacaggttttaaaagaagctttatatcaagcaaaagaagctagagaacatatt
ttaaaactaatggaagaagctgatagaagcatcattgttaatgaagctattttaccaaag
attgaaatttttaatgtagatccaaataaaattcctgatatcataggtcaaggcggtaaa
actataaaagaaatcatcgaaaaatttgaagttaatatcgacttagatagagataaaggc
gaagttaagatagcaggaattaatcatgatttaatttctcaaagcaaagaatatatatta
aatttactccattctaaaggttctaataaaaaacgcgatagaaaagaaatacctaaattt
gatatcggagaagaatttataggaaaagttcaaaaagttgtagaatttggagtttttgta
gaacttaaagaaggtgtggatggtttattgcataattctaagattaaagaaaagttagaa
gtaggcaatgaaattaaagttaaagttgcagaaattaaaaatggaaaagtttctttagat
ttagcctaa
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