Campylobacter lari RM16712: UPTC16712_0888
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Entry
UPTC16712_0888 CDS
T03556
Symbol
dnaE
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
clm
Campylobacter lari RM16712
Pathway
clm03030
DNA replication
clm03430
Mismatch repair
clm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
clm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
UPTC16712_0888 (dnaE)
03430 Mismatch repair
UPTC16712_0888 (dnaE)
03440 Homologous recombination
UPTC16712_0888 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
clm03032
]
UPTC16712_0888 (dnaE)
03400 DNA repair and recombination proteins [BR:
clm03400
]
UPTC16712_0888 (dnaE)
Enzymes [BR:
clm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
UPTC16712_0888 (dnaE)
DNA replication proteins [BR:
clm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
UPTC16712_0888 (dnaE)
DNA repair and recombination proteins [BR:
clm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
UPTC16712_0888 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
SidE_mART
CERK_C
Motif
Other DBs
NCBI-ProteinID:
AJD06395
LinkDB
All DBs
Position
complement(877134..880727)
Genome browser
AA seq
1197 aa
AA seq
DB search
MSQFTHLHLHTEYSLLDGANKLKELAKTLKAQGATSVAMTDHGNMFGAIDFYKTMRAEGI
KPIIGLEAYLHNHDDLSDKSSRQRFHICLFAKNEIGYKNLMYLSSQSYIHGLYYYPRINK
KLLEAHSEGLICSSACLQGEVNWHLNTKNERNLKFGAKGYEGAKEAALWYKKVFGDDFYL
EIMRHGIDDQKFIDDSIIKLAKELDIKIIATNDTHYTFKERAAAHEVFMCIAMGVKLDDP
GRLRHEVHEFYVKTPEQMSELFADIPEAIENTQEIANKCNLELKLGDPTPPNFKFTREYA
KKYGLNLSQEDQEFSFDNDDIVFEYLCKKGLEERLQFIDESKHQEYKDRLDLEISIIKNM
KFSGYMLIVHDFIAAAKEKDIPVGPGRGSAAGSLVSYCLKITDLDPIPYNLLFERFLNPE
RVSMPDIDVDFCQDRRGEVIDYVIDKYGAEKVAQVITFGKLLAKGVIRDVARVCDMSIPD
ADALAKLVPEELKITLEKAYEQEPKIAEFVNSHPKGRQVWDFAKALEGLNRNAGMHAAGV
VISNEALWNKAPLFRQSKNDERHLVTQYSKEYLEDVDLIKFDFLGLKTLTVINNAIKLVK
KRYGKDVIWEKIDMNDPKVYKTIQSGNTLGIFQIESGGMQSLNARLKPERFEDLIAVLAL
YRPGPLDSGMVDDFIDIKHGRKAATYAFEDLKPILENTYGVIVYQEQVMQIVQKIGGFSL
GGADNVRRAMGKKKREILDNLKAEYLEGAKKQGYDEKKADDLFELILKFAEYGFNKSHSA
AYALITFQTAYLKTYYPSEFMAALLTSEESNVDKVAKYIEEMKRMNIKLLPPSINKAQRE
FSATKLEDGSEAIIYGLGAIKSVGIPAIENIMTIRKEEGFSDFDDFISSIDPTKINKKTI
ENLAKSGAFDEFGYTRKCLVDNLELISETSRKIAEVKRNSTASLFGEEEIAADIKVGLHD
SKIEFELMEKLGYEKEILGIYVSGHPLDKFASQIEGIEYFKSMDFETLKGEGELLVVGKI
EDFKSMMSKSGKRYAKAVVLDFYSSFDMIIFEAQVEKVETIFKESKDEAFAFLLRYKNND
NDLSFSLNEIYTLEEAKENELKSFSKRKSFAKKENKEEFMQEPMKFEENIIELDINKLSK
DMVYEIYDLANTRHNPKDTNNKKLVLKVLDMGSCLLYHTNFVLSQEAMDVIVQKCKG
NT seq
3594 nt
NT seq
+upstream
nt +downstream
nt
atgagccaatttacacatttgcatttacacacggaatattctttacttgatggagcaaat
aaactcaaagagcttgctaaaactctaaaagcacaaggtgcaacaagtgttgctatgact
gatcatggaaatatgtttggtgctattgatttttacaaaacgatgagagctgaagggatt
aaacctatcataggacttgaagcatatttacataatcacgatgatttaagtgataaaagc
tcaagacaacgctttcatatttgtttgtttgctaaaaatgaaattggctataaaaatttg
atgtatttaagttcgcaaagctatatacatggcttgtattattacccaaggattaataaa
aaacttttagaagctcatagtgagggtttgatttgctcttctgcatgtttgcaaggtgag
gttaattggcatttaaataccaaaaatgaaagaaatttaaaatttggcgcaaaaggttat
gaaggcgcaaaagaagctgcgctttggtataaaaaggtttttggagatgatttttacctt
gagattatgcgtcatggtattgatgatcaaaaatttatcgatgattctatcatcaaactt
gctaaagagcttgatataaaaatcatcgcaacgaatgatacgcactatacttttaaagaa
agagcagctgcgcatgaagtatttatgtgcatagctatgggtgttaagcttgatgatcct
gggcgtttaagacacgaagtacatgagttttatgtgaaaacaccagagcaaatgagtgag
ctttttgctgacattcctgaagctattgaaaatactcaagaaatagctaataaatgcaat
ctagaattaaaactaggtgatcctacgccaccaaattttaaatttacccgtgaatatgcg
aaaaaatatggcttaaacttaagtcaagaagatcaagaatttagctttgataatgatgat
atagtttttgagtatctttgtaaaaagggcttagaagaaagacttcaatttatcgatgag
agtaagcaccaagagtataaagataggcttgatttagaaattagtattattaaaaatatg
aaattttcaggttatatgctaatcgttcatgattttatcgccgcagctaaggaaaaagat
ataccagttggtccagggcgtgggagtgcagcggggagtttggtttcgtattgtttgaaa
attacagatttagatcctataccttataatcttctttttgagagatttttaaatcctgag
cgtgtatcaatgcccgatattgacgtggatttttgtcaagatagaagaggagaagtgatt
gattatgttattgataaatacggagctgaaaaggttgcacaagttattacctttggtaag
cttttagcaaagggggtaatccgtgatgtagctagggtttgtgatatgagcatacctgat
gcggatgctttggcaaaattagttcctgaagagcttaaaatcactttagaaaaagcttat
gagcaagaaccaaagatcgctgaatttgtaaattctcatccaaaaggacgtcaagtttgg
gactttgctaaagcactagagggtttaaatagaaatgcaggtatgcacgcagccggagtt
gtgatatctaatgaagctttgtggaataaagctccactttttagacaaagcaaaaacgat
gagcgtcatttagttacgcagtattctaaagaatatcttgaagatgtagatttaatcaaa
tttgactttttgggtttaaaaactcttacggtaattaataatgcgattaagctagtgaaa
aagcgctatggtaaagatgtaatttgggaaaaaattgatatgaatgatcctaaggtttat
aaaaccatacaaagtggtaataccttgggtattttccaaatagaatcaggcggtatgcaa
agtttaaatgctaggctaaagcctgaaagatttgaagatttaatcgcggttttagcttta
tatagaccaggaccacttgatagtgggatggtggatgattttatcgatatcaagcatggt
agaaaggctgctacttatgcatttgaagatttaaaacctatacttgaaaatacttatggg
gttatagtttatcaagaacaagttatgcaaatagtgcaaaaaatcggtggtttttcttta
ggcggggctgataatgtgcgccgtgctatgggtaagaaaaaaagagaaattttggataat
cttaaagcagaatatctagaaggcgctaaaaaacaaggctatgatgagaaaaaggctgat
gatttgtttgagcttattttgaaatttgctgaatatggttttaataaatctcactcagct
gcttatgcacttataacttttcaaacagcgtatttaaagacttattatccaagtgagttt
atggctgcgcttttaacaagtgaagaaagcaatgtagacaaggtcgcaaaatacattgaa
gagatgaaaagaatgaatatcaagcttttgccaccaagtatcaataaagcccaaagagaa
tttagtgcaactaagcttgaagatggttctgaagctattatttatgggcttggagcgatt
aaaagtgtgggaattcctgcgatagaaaatatcatgactattcgtaaggaagagggcttt
agtgattttgatgattttataagctcgattgatccaactaagatcaataaaaaaaccata
gaaaatttagctaaatcaggtgcttttgatgagtttggctatactagaaaatgtttagtg
gataatcttgagcttatttcagaaacaagtaggaaaattgctgaagttaaaagaaattct
actgcttcgctttttggagaagaagaaatagctgcagatatcaaagtagggcttcatgat
agcaagatagaatttgaactaatggaaaaactaggctatgaaaaagaaattttaggaatt
tatgtatcaggccatcctttagataaatttgcaagtcaaatagaaggcatagagtatttt
aaaagtatggactttgaaacactcaaaggcgagggtgagcttttggttgtagggaagatt
gaagattttaaatcaatgatgagtaaaagcggtaaaagatacgctaaggctgtagtttta
gacttttactcttcttttgatatgattatctttgaagctcaggtggaaaaagtagaaacg
attttcaaagaaagcaaagacgaagcttttgcttttttactaagatataaaaataatgat
aatgatttaagttttagtttaaatgaaatttataccctagaagaagcaaaagaaaatgag
ctaaaatcttttagcaaaagaaaaagctttgcaaaaaaagaaaacaaagaagaattcatg
caagaacctatgaaatttgaagaaaatatcatagaacttgacattaacaagcttagtaaa
gatatggtgtatgaaatttatgatctagctaatacaagacataacccaaaagatactaat
aacaaaaaacttgtactaaaagtacttgatatgggcagttgcttgctttatcatacaaat
tttgttctctcgcaagaagctatggatgtgatagttcaaaaatgtaaaggttaa
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