Campylobacter lari NCTC 11845: UPTC3659_0018
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Entry
UPTC3659_0018 CDS
T03552
Symbol
recJ
Name
(GenBank) single-stranded DNA-specific exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
cln
Campylobacter lari NCTC 11845
Pathway
cln03410
Base excision repair
cln03430
Mismatch repair
cln03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cln00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
UPTC3659_0018 (recJ)
03430 Mismatch repair
UPTC3659_0018 (recJ)
03440 Homologous recombination
UPTC3659_0018 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cln03400
]
UPTC3659_0018 (recJ)
DNA repair and recombination proteins [BR:
cln03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
UPTC3659_0018 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
UPTC3659_0018 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
UPTC3659_0018 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
DUF87
Motif
Other DBs
NCBI-ProteinID:
AJD00910
UniProt:
A0A0A8HVW7
LinkDB
All DBs
Position
15765..17336
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AA seq
523 aa
AA seq
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MLNKAKIKKILHQRFINDTHVKLCDLPMPSCLKDVYKGALRIKEAIEKNQKLAIVGDYDV
DGVISCVILSEFFDDIGFDYIVKIPNRFKDGYGLNEEIINELDGVDLIITVDNGIAAFDA
AELCLQKGIDLIITDHHMPPATLPKAYAIINPKQQDCEFPDIEICGAQVAWYLVAAIKEV
CKINYNMCKFIELLSIAIIADMMELRDLNRALVRKGIECINDSKRVAFKAIKQYFGKDKF
ELDNISFLIAPLINSAGRMDDAIISYKFLHSKNIDEVMGYLEQIITYNNSRKDEERELFK
QCLEQVDENDPVIIVNGQNWHEGVLGIVASRLAKHFNKPAFVFSECEQKAKASVRSVGRI
DILNVIEQAKEFVLSYGGHKGAAGVLVELEKFSIFKNKLYEICQNIPKDDFYNADEVLGS
IDPNEVDFELLEILEFFEPFGHKNPRPYFKFDKLFVKNKRRLGKEENHIKLILTQGNKTL
EALFFNFDYEPEIGENINFIASVSKNNFRGLITPQLTIKEILR
NT seq
1572 nt
NT seq
+upstream
nt +downstream
nt
atgctaaataaagccaaaataaaaaaaattttacaccagcgttttattaacgatacgcat
gtaaagctttgtgatttgcctatgccatcttgtttaaaagatgtctataagggtgctttg
cgtattaaagaagcgattgaaaaaaatcaaaagcttgctattgttggggattatgatgta
gatggagtgatttcttgtgtgattttatctgaattttttgatgatattggttttgattat
atagtaaaaattccaaatcgttttaaagatggatatggtctaaatgaagaaattatcaat
gaacttgatggggtagatttaatcattactgtagataatggtatagcagcatttgatgca
gcagagctttgtttgcaaaaaggaattgatttaatcattaccgatcatcatatgcctcca
gctactttaccaaaagcttatgcgatcattaatcctaaacaacaagattgtgaatttcct
gatattgaaatttgtggagctcaagtggcttggtatttggttgctgcgataaaagaagta
tgtaagattaattataatatgtgtaaattcatcgaacttttgtcaattgcaattatcgca
gatatgatggagcttagagacttaaatagagccttagttagaaaaggtatagagtgtatt
aatgattcaaaacgagtggcatttaaagcgattaagcagtattttggtaaggataaattc
gaacttgataatattagctttttaattgcacctttgattaatagtgcaggtagaatggat
gatgcgattatttcttataaatttttacattctaaaaatattgatgaagttatgggatat
ttagagcaaatcattacttataataatagtcgcaaagatgaagaacgtgagctttttaag
cagtgtttagagcaagttgatgaaaacgatcctgtaattattgttaatggtcaaaattgg
catgagggtgttttgggcatagttgcaagtcgcttagcaaagcattttaacaaacctgcc
tttgttttttcagaatgtgagcaaaaagctaaagctagtgttagaagcgtgggtaggata
gatattttaaatgttatagagcaagctaaagaattcgttttaagctatggtgggcataaa
ggcgcagctggagttttagtcgagcttgaaaaatttagtatttttaaaaataaactttat
gaaatttgtcaaaatatccctaaagatgatttttacaatgctgatgaggttttgggtagt
attgacccaaatgaagttgattttgaacttttagagatattagaattttttgaacctttt
ggacataaaaacccaagaccttattttaaatttgataagctttttgtaaaaaataaaaga
agattaggtaaggaagaaaaccatataaagcttattctaacacaaggaaataagacttta
gaagctttattttttaactttgactatgaaccagaaattggggaaaatatcaattttata
gcgagtgtttccaaaaataattttagaggattaattacccctcaacttactatcaaagaa
attcttagataa
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