Campylobacter lari NCTC 11845: UPTC3659_0023
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Entry
UPTC3659_0023 CDS
T03552
Name
(GenBank) mRNA degradation ribonuclease J1/J2 (metallo-beta-lactamase superfamily)
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
cln
Campylobacter lari NCTC 11845
Pathway
cln03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cln00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
UPTC3659_0023
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cln03019
]
UPTC3659_0023
Messenger RNA biogenesis [BR:
cln03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
UPTC3659_0023
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
AJD00915
UniProt:
A0A0A8HVX1
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Position
complement(20188..22146)
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AA seq
652 aa
AA seq
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MSEENKTQEQNKTKRFNKFKNKRKKDSQTQEQNSEIKNETKVENTQTEASEEKKKKKKNR
NLPSKLSGNEEWQIELAKSIEANKIMHELRLHPLKHNNSSEHKIRITPLGGLGEIGGNIT
VFETNNDAIIVDIGMSFPDGTMHGVDIIIPDFDYVRKIKNKIRAIIITHAHEDHIGAVPY
FFKEFQFPIYATPLALGMISNKFEEHGLKAERKWFRPITKRQIYEIGEFNLEWIHITHSI
IDACALAIKTKAGTIIHTGDFKIDQTPIDGYPTDLSRLAQYGEEGVLCLLSDSTNSYKEG
YTKSESSVGPTFDQIFAKTKGRVIMSTFSSNIHRVYQAISYGLKYGRKVCVIGRSMERNL
YTTMELGYIKLDRKIFIDADEVSKYKDNEVLIVTTGSQGETMSALYRMATDEHKFIKIKP
SDQVIISAKAIPGNEANVSAVLDFLLKAGAKVAYQEFSEIHVSGHASIEEQKLMLTLVKP
KFFLPVHGEYNHINKHKETALKCGIPERNIYLMSDGDQVELCQKYIKRVKTVKTGKVFVD
NQINKQIADDVVIDRQKLADSGIVVIIAQLDKASKTLINKPRVFSYGLVADKQDGAFSKE
MSDVLSQFFPNVKDEILDNPKVLEAQIRQVLRKHIFRKIKKYPTIVPTIFVM
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaagaaaacaaaactcaagagcaaaataaaactaaaagatttaataaattcaaa
aacaaaagaaaaaaagattcacaaactcaagagcaaaatagtgaaattaaaaacgaaaca
aaagtagaaaatactcaaactgaagctagcgaagaaaaaaagaaaaagaaaaaaaataga
aatttaccttctaaattaagcggtaatgaagaatggcaaatagaacttgccaaaagcata
gaagctaataaaatcatgcacgagctaagacttcaccctttaaaacacaacaactcaagc
gaacataaaattcgtattacacctttgggtgggcttggggaaatcggtggaaatatcact
gtttttgaaaccaacaacgatgcgattatcgttgatataggtatgagttttccagatgga
accatgcatggagtagatattatcatacctgattttgactatgtaagaaagattaaaaac
aaaattcgcgctatcatcatcactcatgctcatgaagatcacatcggcgctgtgccgtat
tttttcaaagaatttcaatttcctatctacgcaacacctttagcgctaggtatgatttca
aataaatttgaagagcatggtttaaaggctgagcgcaaatggtttagacctataacaaaa
agacaaatttatgaaataggtgaatttaatttagaatggattcacataacccactctatc
atcgatgcttgtgctttagctattaaaactaaagcaggaaccattatacacactggcgat
tttaaaatagatcaaacaccaattgatggttatccaacagatttaagtcgtttagctcaa
tatggcgaagaaggtgtgctttgtcttttaagtgatagtacaaactcatataaagaaggt
tatacaaaaagtgaaagctcagtaggccctacttttgatcaaattttcgccaaaactaaa
ggcagggtaatcatgagtacctttagttctaatatacaccgtgtatatcaagctattagc
tatggtttaaaatatggtagaaaagtatgtgttatagggcgttctatggaaagaaatctc
tataccactatggaacttggctatatcaaacttgatagaaaaattttcattgacgctgat
gaagtaagcaaatacaaagacaacgaagtactaattgtcacgacaggaagtcaaggtgag
accatgagtgctttatatagaatggcaactgatgagcataaatttatcaaaatcaaacct
agcgatcaagttatcatttcagctaaagcaataccaggcaatgaagcaaatgtttctgct
gtgcttgattttcttttaaaagcaggggctaaagtagcttatcaagaatttagtgaaatt
catgtaagcggacatgctagtatagaagaacaaaaactcatgctaactttagtaaaacct
aaatttttcttaccagtgcatggagagtataatcatatcaataaacacaaagaaactgct
ctaaaatgtggcatacctgaaagaaatatctatttaatgagtgatggggatcaagtagag
ctttgtcaaaaatatatcaaacgcgtaaaaacagttaaaacaggaaaagtctttgtagat
aatcaaatcaacaagcaaatcgcagatgatgtggtaattgatagacaaaaactagcagat
agcggtatagttgtcatcattgctcagcttgataaagcaagtaaaacactaattaataaa
ccaagagtatttagctatggcttggtagctgataaacaagatggagcattctcaaaagaa
atgagtgatgttttaagtcaatttttccctaatgtaaaagatgaaattttagataatcca
aaagttttagaagctcaaattagacaagtactaagaaagcatatttttagaaaaatcaaa
aaatatccaaccatagtaccaactatttttgtgatgtaa
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